Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L17
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244...    28   4.6  
09_04_0506 - 18188785-18190599                                         27   8.0  

>04_04_1218 -
           31822915-31823141,31823418-31823832,31824090-31824440,
           31825391-31825549,31825965-31826093,31826257-31826460,
           31827200-31827412,31827547-31830912,31830999-31831150,
           31831912-31832407,31832646-31833456,31833537-31834728,
           31834856-31834922
          Length = 2593

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 303 CDSVYVFKVSNIYH*KSNVLSNLWIFNKFKRYKLNFSVYVACV 175
           CD++ V   +N+Y  + ++   +  FN+F+ Y  +FS  + CV
Sbjct: 827 CDAISVVG-NNLYKYQEHIRKLISKFNQFEGYSPSFSPLIVCV 868


>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 534 SDVNVPDSIVQSKHIPPSSRP 472
           +DVNV D  +QS H PP   P
Sbjct: 36  NDVNVGDGFLQSSHPPPQPPP 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,815,720
Number of Sequences: 37544
Number of extensions: 213752
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)