Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L16
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    57   2e-09
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    30   0.29 
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    29   0.68 

>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 25/57 (43%), Positives = 40/57 (70%)
 Frame = +2

Query: 11  GQMVLQSGKHPGLLKDEVCSPGGTTICGVTALENGNLRATLINAVEAATLRTKELGR 181
           G+MVLQ G+HP +++++V +P G TI G+ ALE+G +R+T+   +E AT     LG+
Sbjct: 227 GRMVLQ-GQHPAMIRNDVSTPAGCTISGLLALEDGKIRSTIARGIEQATKTASGLGK 282


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 193  INLFSAKFLC--SKCCSFNRINKC 128
            I LF  K LC  S CCSFN I +C
Sbjct: 1841 ICLFCGKLLCFQSHCCSFNGIGEC 1864


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 415 FVWNKCR*DILLK*ENN*SSKMLIN*HISSTNLIFFIFSTVIFFLPM 275
           +VW K R + +L  E N    +    H+     +FFIFS + FFL M
Sbjct: 324 YVWEKTRVNYMLIFEFNQRKSLNWRQHLEIVGAVFFIFS-LFFFLCM 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,158
Number of Sequences: 5004
Number of extensions: 49160
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)