Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L16
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0174 - 41711220-41711408,41711483-41711669,41711690-417118...    69   3e-12
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    32   0.40 
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    22   1.9  

>01_07_0174 -
           41711220-41711408,41711483-41711669,41711690-41711810,
           41712194-41712266,41712494-41712585,41712900-41712948,
           41713189-41713413
          Length = 311

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 34/55 (61%), Positives = 39/55 (70%)
 Frame = +2

Query: 17  MVLQSGKHPGLLKDEVCSPGGTTICGVTALENGNLRATLINAVEAATLRTKELGR 181
           MV ++GKHPG LKD V SP GTTI G+  LE G  R TLINAV AAT R +EL +
Sbjct: 256 MVNKTGKHPGQLKDMVTSPAGTTITGIQELEKGAFRGTLINAVVAATKRCRELSQ 310


>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
            15222420-15226194
          Length = 2502

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 328  N*CVS*LAFYLINCFPILRGYPSGIYSIQT*SLVSSWI 441
            N C + L  YL NC   L  YP G Y I   +LV +W+
Sbjct: 1387 NLCYNNLPHYLKNCMLYLNKYPEG-YKISKDALVKAWV 1423


>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 22.2 bits (45), Expect(3) = 1.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 475 IYTHHHHDHTLI 510
           ++ HHHH H L+
Sbjct: 10  LHHHHHHHHHLL 21



 Score = 22.2 bits (45), Expect(3) = 1.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 484 HHHHDHTLIFSIN*LL 531
           HHHH H L  ++  LL
Sbjct: 14  HHHHHHLLAVAVVLLL 29



 Score = 21.8 bits (44), Expect(3) = 1.9
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +1

Query: 469 QIIYTHHHHDH 501
           ++ + HHHH H
Sbjct: 6   RVAFLHHHHHH 16


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,995
Number of Sequences: 37544
Number of extensions: 284325
Number of successful extensions: 760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)