Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L16
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical pr...    61   7e-10
U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical pr...    52   3e-07
AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical...    29   2.5  
U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer ...    28   4.4  
U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer ...    28   4.4  
AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform...    28   4.4  

>Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical
           protein M153.1 protein.
          Length = 279

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 28/57 (49%), Positives = 42/57 (73%)
 Frame = +2

Query: 14  QMVLQSGKHPGLLKDEVCSPGGTTICGVTALENGNLRATLINAVEAATLRTKELGRK 184
           +MVL++G HP  LKD+V SP G+++ G+  LE+G L+  L++AVEAAT R++  G K
Sbjct: 212 KMVLETGIHPAQLKDDVQSPAGSSVYGMHKLESGGLKGVLMDAVEAATNRSRATGDK 268


>U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical
           protein F55G1.9 protein.
          Length = 299

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 25/49 (51%), Positives = 32/49 (65%)
 Frame = +2

Query: 35  KHPGLLKDEVCSPGGTTICGVTALENGNLRATLINAVEAATLRTKELGR 181
           +H G LKD VCSPGGTTI GV ALE    R  ++ AV AA+ +  E+ +
Sbjct: 247 QHFGSLKDMVCSPGGTTIEGVRALEKNGFRYAVMEAVVAASTKADEMAK 295


>AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical
           protein Y73F8A.24 protein.
          Length = 481

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -1

Query: 532 TITNLWKKSTYGHGGDGYILFGRKIFTIMLLSRRKQGTTFV 410
           T  NL+KK+ +  GGD  I      F  +LLS  KQ  T+V
Sbjct: 170 TTRNLFKKANFTSGGDTQIEITTFGFQFLLLSPVKQMWTYV 210


>U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform b protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 355 YLINCFPILRGYPSGIYSIQT*SLVSSWIITLW*IFFYQIIYTHHHHDH 501
           + +NC+P LR  P GI    T    S + +  W   F  I+  HH + H
Sbjct: 280 FFVNCYPWLRYLPEGILRKWTNYKRSGFRLQQW---FRTILEEHHVNRH 325


>U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform a protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 355 YLINCFPILRGYPSGIYSIQT*SLVSSWIITLW*IFFYQIIYTHHHHDH 501
           + +NC+P LR  P GI    T    S + +  W   F  I+  HH + H
Sbjct: 295 FFVNCYPWLRYLPEGILRKWTNYKRSGFRLQQW---FRTILEEHHVNRH 340


>AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform A
           protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 355 YLINCFPILRGYPSGIYSIQT*SLVSSWIITLW*IFFYQIIYTHHHHDH 501
           + +NC+P LR  P GI    T    S + +  W   F  I+  HH + H
Sbjct: 280 FFVNCYPWLRYLPEGILRKWTNYKRSGFRLQQW---FRTILEEHHVNRH 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,484,247
Number of Sequences: 27780
Number of extensions: 271224
Number of successful extensions: 702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)