Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L15
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 87 1e-18
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 85 8e-18
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 79 4e-16
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 27 2.3
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 26 3.1
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 26 4.1
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 25 5.4
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 5.4
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 5.4
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 87.4 bits (207), Expect = 1e-18
Identities = 43/109 (39%), Positives = 58/109 (53%)
Frame = +3
Query: 105 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 284
S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ N
Sbjct: 2 SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61
Query: 285 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 431
IGS D+DMGFGLFD
Sbjct: 62 IGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 84.6 bits (200), Expect = 8e-18
Identities = 44/109 (40%), Positives = 59/109 (54%)
Frame = +3
Query: 105 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 284
S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ N
Sbjct: 2 SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61
Query: 285 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 431
IGSG D+DMGFGLFD
Sbjct: 62 IGSG-AGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 79.0 bits (186), Expect = 4e-16
Identities = 40/109 (36%), Positives = 57/109 (52%)
Frame = +3
Query: 105 SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 284
S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAKALEG ++++L+ N
Sbjct: 2 SASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLN 61
Query: 285 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 431
IGS D+DMGFGLFD
Sbjct: 62 IGS-AGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 230 RPVRLNIYSSRFQYG*DFLTGNGDIVIYQDKGGVNTS 120
+PV L +++F +G +T N D I+ K G+N S
Sbjct: 66 KPVSLPASTTQFTFGKPAVTANNDSDIHLKKRGLNKS 102
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 26.2 bits (55), Expect = 3.1
Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Frame = +3
Query: 138 LILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT----NIGSGVXX 305
L+ V + + I ++L ++ E L G N+ +LI + +
Sbjct: 9 LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68
Query: 306 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 431
D+DMGFGLFD
Sbjct: 69 GAVATPAAGGAAGAEATSAAEEAKEEEAAEESDEDMGFGLFD 110
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 132 SALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 281
S L+L + DV A++ E+IS IL + +W AL G+N++D I+
Sbjct: 119 SILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 402 DDDMGFGLFD 431
D+DMGFGLFD
Sbjct: 303 DEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 402 DDDMGFGLFD 431
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +3
Query: 402 DDDMGFGLFD 431
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,605,280
Number of Sequences: 5004
Number of extensions: 24752
Number of successful extensions: 74
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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