Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L14
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce...    56   3e-09
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    28   1.0  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   1.4  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    27   2.4  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   7.3  
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    25   9.7  

>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 104

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 265 KKVVWTEDTVDNEHMNKKKSKCCCIYEKPRRF 360
           ++V WT  TVDNEHMNKKKSK CCI+ K R+F
Sbjct: 44  RRVRWTVSTVDNEHMNKKKSKVCCIFHKQRKF 75


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 448 QFDSWLTSSSRRARSNVRTPHRSRPIP 368
           QF S ++SSS+  + N +T + S+PIP
Sbjct: 472 QFTSNISSSSKPRKDNNKTANSSKPIP 498


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 232 ITLKPTRTQQRKKVVWTEDTVDNEHMNKKKS 324
           ++ KP    + KK +W    ++ EH + KK+
Sbjct: 232 VSAKPPNKSELKKYIWNRSVLNKEHGSLKKA 262


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 337 YSNIWISFCSYAHCRLCPLSRRLSFSVV 254
           +SNIW+   +Y +C+  P +  LS   +
Sbjct: 200 FSNIWVYSNNYTYCKYWPFNEILSLKQI 227


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +2

Query: 248 RAHNRERKSSGQRTQSTMSI*TKRNPNVAVYMRNRDALANRNRTRAMRSANIASGTSRRR 427
           R H +  +   Q T+ +    T+  P  +     RD L    + R  RSA   S  +R+R
Sbjct: 120 RLHQQNAQYMAQSTRRS----TRDKPLTSAAAGKRDKLTELKKRRQERSARSVSERTRKR 175

Query: 428 S 430
           S
Sbjct: 176 S 176


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 144 KTRRNGNNKHGR 179
           K R NG NKHGR
Sbjct: 4   KRRNNGRNKHGR 15


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,181
Number of Sequences: 5004
Number of extensions: 29224
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)