Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L14
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0228 + 13004688-13005044                                         46   2e-05
03_05_0519 - 25131614-25134778                                         28   5.6  
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832...    27   9.9  

>04_03_0228 + 13004688-13005044
          Length = 118

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = +1

Query: 190 PPQLQEEPVERVAVITLKPTRTQQRKKVVWTEDTVDNEHMNKKKSKCCCIYEK 348
           P      P     V+ LK    + +KKV W E TVDNE + +K SK CCI+ K
Sbjct: 24  PASSAPPPAAETVVLRLK---RRAKKKVTWKEGTVDNESLGRKSSKKCCIFHK 73


>03_05_0519 - 25131614-25134778
          Length = 1054

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 357 ASRFLIYTATFGFLFVHMLIVDCVLCPDDFLSLLCARRF 241
           A+R   +T     + VH L+V  VLCP+  L  +C   F
Sbjct: 869 ANRVRTWTHPTTTVLVHALLVAVVLCPEMILPTVCLYLF 907


>03_06_0417 -
           33782577-33782687,33782996-33783052,33783110-33783205,
           33783252-33783284,33783543-33783599,33783968-33784060,
           33784308-33784395,33784812-33784835,33784956-33785164
          Length = 255

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 350 GFSYIQQHLDFFLFICSLSTVSSVQTTFFLCCVR 249
           GF+       F +  CSL  +S++Q  FF+ C +
Sbjct: 174 GFAIFGLGYCFGIVFCSLYKISNIQFQFFITCAK 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,414,279
Number of Sequences: 37544
Number of extensions: 167669
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)