Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L14
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006605-7|AAK85440.1|  107|Caenorhabditis elegans Hypothetical ...    74   6e-14
Z83236-6|CAB05783.1|  132|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z48544-8|CAA88441.1|  109|Caenorhabditis elegans Hypothetical pr...    52   3e-07
U64855-6|ABN43077.1|   54|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    27   8.9  
U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AC006605-7|AAK85440.1|  107|Caenorhabditis elegans Hypothetical
           protein C07H6.2 protein.
          Length = 107

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
 Frame = +1

Query: 190 PPQLQEEPVERVAVITLKPTRTQQRKKVVWTEDTVDNEHMNKKKSKCCCIYEKPRRF-GX 366
           PP  ++  V  ++    +P+ T +R+ VVW  +TVDNE M KKKSKCCCIY+KP+ +   
Sbjct: 20  PPSREQNLVLHLSPNPAQPS-TSERRHVVWATETVDNEGMGKKKSKCCCIYKKPKNWQDS 78

Query: 367 XXXXXXXXXXXHCFGHVEKKK 429
                      HC GHVE KK
Sbjct: 79  SSDSDSDCETGHCRGHVEHKK 99


>Z83236-6|CAB05783.1|  132|Caenorhabditis elegans Hypothetical
           protein K10H10.7 protein.
          Length = 132

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +1

Query: 205 EEPVERVAVITLKPTRTQQRKKVVWTEDTVDNEHMNKKKSKCCCIYEKPRRFGX-XXXXX 381
           +E V+   V+ L+   +     V W E  VDNEHM + KS CCCIY  PR++        
Sbjct: 18  QEEVQEEHVLRLRAPPSPPH--VTWAEGVVDNEHMGRLKSNCCCIYVAPRQWDDPSTWEP 75

Query: 382 XXXXXXHCFGHV--EKKK 429
                 HC GH   E+KK
Sbjct: 76  NEYETEHCRGHTLPERKK 93


>Z48544-8|CAA88441.1|  109|Caenorhabditis elegans Hypothetical
           protein ZK945.8 protein.
          Length = 109

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 259 QRKKVVWTEDTVDNEHMNKKKSKCCCIYEKPRRFGX-XXXXXXXXXXXHCFGHVEKKKLT 435
           +R +V W    +DNEHM + KS CCCIY  PR +              HC GH   +K  
Sbjct: 28  ERPRVTWGAGVIDNEHMGRLKSNCCCIYTPPRVWDDPSTWEPEEHETEHCRGHTLPEKKQ 87

Query: 436 KNQ 444
           K Q
Sbjct: 88  KPQ 90


>U64855-6|ABN43077.1|   54|Caenorhabditis elegans Hypothetical
           protein ZK742.6 protein.
          Length = 54

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 193 PQLQEEPVERVAVITLKPTRTQQRKKVVWTEDTVDNEHMNKKKSKCCCI 339
           P   ++P     V+  +P+      +V  + DT+D+ H    KSKCC I
Sbjct: 7   PADPKDPRRPPKVVITQPSSNDLMPRV--SIDTIDSYHREVSKSKCCTI 53


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 242 NRRAHNRERKSSGQRTQSTMSI*TKRNPNVAVYMRNRDALANRNRTRA 385
           +RR+ +  R+ SG+ ++S      ++ P      R+R    NRN TRA
Sbjct: 332 SRRSESTSRRRSGRHSRSRSRSPPRKRPVRRSRSRSRSRTPNRNWTRA 379


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
            protein F44D12.1 protein.
          Length = 1034

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 226  AVITLKPTRTQQRKKVVWTEDTVDNE 303
            AV+ LK     ++KK+VW +  VD E
Sbjct: 1009 AVLQLKKIIEDEQKKIVWVQRKVDEE 1034


>U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical
           protein R11B5.1 protein.
          Length = 614

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 246 DAHTTEKESRLDRGHSRQ*AYEQKEIQM 329
           ++ +T +E++  RGH R+ +YE  +IQ+
Sbjct: 60  ESPSTAQETKFRRGHIRRSSYESAQIQL 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,264,927
Number of Sequences: 27780
Number of extensions: 170787
Number of successful extensions: 573
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)