Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L14
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.5  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   2.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   8.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.2  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   8.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 277 WTEDTVDNEHMNKKKSKCCCIYEKP 351
           W+ D   N  + +  S  C + EKP
Sbjct: 201 WSPDPAINRRLKETYSNMCALCEKP 225


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 277 WTEDTVDNEHMNKKKSKCCCIYEKP 351
           W+ D   N  + +  S  C + EKP
Sbjct: 201 WSPDPAINRRLKETYSNMCALCEKP 225


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 277 WTEDTVDNEHMNKKKSKCCCIYEKP 351
           W+ D   N  + +  S  C + EKP
Sbjct: 201 WSPDPAINRRLKETYSNMCALCEKP 225


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 132 SISHKTLLNM*KFSHYTFNVEYNIL 58
           S+S+KT+ N   + +Y   + YNI+
Sbjct: 317 SLSNKTIHNNNNYKNYNKKLYYNII 341


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = +2

Query: 242 NRRAHNRERKSSGQRTQSTMSI*TKRNPNVAVYMRNRDALANRN 373
           N R + + R+ S +R++        R P +   + N+    N N
Sbjct: 52  NERKYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNN 95


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = +2

Query: 242 NRRAHNRERKSSGQRTQSTMSI*TKRNPNVAVYMRNRDALANRN 373
           N R + + R+ S +R++        R P +   + N+    N N
Sbjct: 52  NERKYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNN 95


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = +2

Query: 242 NRRAHNRERKSSGQRTQSTMSI*TKRNPNVAVYMRNRDALANRN 373
           N R + + R+ S +R++        R P +   + N+    N N
Sbjct: 285 NEREYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNN 328



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 132 SISHKTLLNM*KFSHYTFNVEYN 64
           S+S+KT+ N   +++  +N  YN
Sbjct: 317 SLSNKTIHNNNNYNNNNYNNNYN 339


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 42  VIFLLFRYKLFS 7
           +IFLL R+K FS
Sbjct: 134 IIFLLIRFKSFS 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,573
Number of Sequences: 438
Number of extensions: 2178
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)