Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L13
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    91   8e-20
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    86   2e-18
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    82   4e-17
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    29   0.35 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   0.81 
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   5.7  
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    25   5.7  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 91.1 bits (216), Expect = 8e-20
 Identities = 40/65 (61%), Positives = 57/65 (87%)
 Frame = +3

Query: 72  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 251
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIEA++E+++ +ISELNGKN+EELI AG  
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 252 KLSSM 266
           KLS++
Sbjct: 61  KLSTV 65


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 86.2 bits (204), Expect = 2e-18
 Identities = 37/65 (56%), Positives = 57/65 (87%)
 Frame = +3

Query: 72  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 251
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIEA+SE+++ +I+ELNGK+++ELI AG  
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 252 KLSSM 266
           KL+++
Sbjct: 61  KLATV 65


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 82.2 bits (194), Expect = 4e-17
 Identities = 35/65 (53%), Positives = 56/65 (86%)
 Frame = +3

Query: 72  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 251
           M+Y+AAYLL  +GGK SP+A+D+E +LS+VGIE++SE+++ +I EL+GK+++ELI AG  
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 252 KLSSM 266
           KL+++
Sbjct: 61  KLATV 65


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 141 EKILSSVGIEADSEKLKKVISELNGKNVEELI 236
           E +L S G+E  S+   KV S +N K+VEE I
Sbjct: 297 ELVLLSEGVEMYSDDWAKVASHVNTKSVEECI 328


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 138  VEKILSSVGIEADSEKLKKVISELNG 215
            V++I   VG+E DSE  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 120 SPAAADVEKILS--SVGIEADSEKLKKVISELNGKNVEELIEAGRGKLS 260
           SP++  +  ++   + G   DSEK+K  +  +  K+ ++  E   GK S
Sbjct: 444 SPSSKPISTLIQEKNFGTIGDSEKIKACVESVLSKHSKQFEELKNGKTS 492


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 135 DVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSS 263
           DV++ LS +  EA    +       NG+ +EE++ A   KL +
Sbjct: 56  DVDQ-LSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEA 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,888
Number of Sequences: 5004
Number of extensions: 18687
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)