Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L13
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     79   1e-15
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           68   4e-12
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    67   8e-12
07_01_1001 - 8460467-8460799                                           62   2e-10
07_03_0321 + 16757414-16757743                                         61   4e-10
01_06_0098 - 26416768-26416998                                         31   0.35 
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   3.2  
12_01_0731 - 6516894-6517473,6517485-6519574                           27   5.6  
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166...    27   7.4  
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    27   9.8  
02_05_0992 - 33364827-33365750                                         27   9.8  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 36/65 (55%), Positives = 52/65 (80%)
 Frame = +3

Query: 72  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 251
           M+ +AAYLLAVLGG  SP+A D++ IL SVG+EA+ E+L+ ++SEL GK++ E+I AGR 
Sbjct: 1   MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60

Query: 252 KLSSM 266
           K +S+
Sbjct: 61  KFASV 65


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 29/65 (44%), Positives = 48/65 (73%)
 Frame = +3

Query: 72  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 251
           M++++AYL+A L G +SP A D+  IL SVG E D+ K++ ++S+++GK++ ELI  GR 
Sbjct: 1   MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60

Query: 252 KLSSM 266
           K +S+
Sbjct: 61  KFASV 65


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 66.9 bits (156), Expect = 8e-12
 Identities = 29/66 (43%), Positives = 48/66 (72%)
 Frame = +3

Query: 69  KMRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGR 248
           +M++++AYLLA L G  +P+A D+  IL SVG E D  K++ ++S+L GK++ E+I +GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252

Query: 249 GKLSSM 266
            K +S+
Sbjct: 253 EKFASV 258


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 28/63 (44%), Positives = 42/63 (66%)
 Frame = +3

Query: 72  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 251
           MR+VAAYL+A +GG ASP   DV  IL +VG + D +KL  +  ++ GK++ E++ AG  
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60

Query: 252 KLS 260
            L+
Sbjct: 61  MLA 63


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 28/63 (44%), Positives = 42/63 (66%)
 Frame = +3

Query: 72  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 251
           MR+VAAYL+A +GG ASP   DV  IL +VG + D +KL  +  ++ GK++ E++ AG  
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60

Query: 252 KLS 260
            L+
Sbjct: 61  MLA 63


>01_06_0098 - 26416768-26416998
          Length = 76

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 123 PAAADVEKILSSVGIEADSEKLKKVISELNGKN 221
           P    V KI+ +V IEADS + K ++  L GK+
Sbjct: 16  PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 108 GGKA-SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVE 227
           GG+  SPA  D+   L+  G E DS   + ++S+LNG   E
Sbjct: 45  GGQGDSPATQDLLSKLNGSGGEGDSPATQDLLSKLNGSGGE 85


>12_01_0731 - 6516894-6517473,6517485-6519574
          Length = 889

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 100 PCWAAKRPQLLLMSKRSSALWG 165
           PCW +K PQLL++  +S+   G
Sbjct: 714 PCWMSKLPQLLVLVLKSNRFSG 735


>08_02_0909 -
           22515326-22515418,22515992-22516150,22516583-22516658,
           22517980-22518141,22518826-22519259,22519723-22521414
          Length = 871

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 144 KILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSS 263
           ++LS  GI++ S K    +  ++G N++EL  AG  +L+S
Sbjct: 674 EVLSMSGIQSVSNKFVNELIPVHGSNLKELAFAGCLQLTS 713


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 105 LGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAG 245
           +G  ASPAAA+++ + +   I A    +  V +E+   + +E +  G
Sbjct: 52  IGRPASPAAAEMDTVTTMEAINAKIVSMDIVRAEIKAVDAQESLGGG 98


>02_05_0992 - 33364827-33365750
          Length = 307

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -2

Query: 163 PTELRIFSTSAAAGDALPPNTA---SKYAAT*RIF*VAKTR-NVYCRKQNVRLA 14
           P E R+ S+ AA GD+ P   A   +K A   R+     TR + Y R+  VRLA
Sbjct: 27  PNEFRLQSSLAACGDSAPATAADAVAKAAPDIRVLLGVLTRADKYERRALVRLA 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,830,802
Number of Sequences: 37544
Number of extensions: 150822
Number of successful extensions: 465
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)