Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L13
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    77   6e-15
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    70   7e-13
AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical ...    29   1.2  
Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z68301-8|CAA92626.2|  484|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic catio...    27   8.8  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 77.0 bits (181), Expect = 6e-15
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +3

Query: 72  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 251
           MRYV+AYLLAVLGG A+P   D++ ILS+VG++AD+E  K V+S L GK VEELI  G  
Sbjct: 1   MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSA 60

Query: 252 KLSSM 266
            L S+
Sbjct: 61  GLVSV 65


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 70.1 bits (164), Expect = 7e-13
 Identities = 32/65 (49%), Positives = 44/65 (67%)
 Frame = +3

Query: 72  MRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 251
           M+Y+ AYLLA LGG ASP+A DV K+L + G++ D E    V+  L GK + E+I  G+ 
Sbjct: 1   MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKV 60

Query: 252 KLSSM 266
           KLSS+
Sbjct: 61  KLSSV 65


>AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical
           protein F18A12.4 protein.
          Length = 674

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +3

Query: 39  QYTFRVLAT*KMRYVAAYLLAVLGGKASPAAADVEKILSSVGIEADSEKLKKVISELNGK 218
           Q  FR+L   K   +A  L +++    S   + + +IL + G++ DSE++ K   E +  
Sbjct: 186 QLDFRILTEGKFVRIAPTLGSIVHN--STMISMISEILEANGVQPDSEEISKEFEEYSSL 243

Query: 219 NVEELIEAGRGKLS 260
            ++       GKLS
Sbjct: 244 QMKLAKYQSSGKLS 257


>Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical
           protein K04G2.3 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +3

Query: 72  MRYVAAYLLAVLGGKASPAAAD-VEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGR 248
           ++Y ++  L  LG   +    + +E  +S++GI+ D ++  KV+S   G  ++ L  +  
Sbjct: 172 LQYNSSVDLKYLGQNVTVTPEEPIESKMSAMGIDDDKKRNSKVVSTAVGYKIQILNASAE 231

Query: 249 GKLSSM 266
           G  S +
Sbjct: 232 GSTSDV 237


>AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical
           protein Y25C1A.5 protein.
          Length = 971

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 135 DVEKILSSVGIEADSEKLKKVISELNGKNVEELI 236
           D+ ++LSS G+E   + L   +  ++ +NVE+++
Sbjct: 325 DILRVLSSPGLEVRKKTLSLALDLVSSRNVEDMV 358


>Z68301-8|CAA92626.2|  484|Caenorhabditis elegans Hypothetical
           protein W01B6.3 protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 361 QRILNRTTTWASVFLTSFIITRLGVDAAL 447
           + +L+R T W SV++ SF++   G+  ++
Sbjct: 13  KELLDRKTPWKSVYVVSFLLLLTGLQMSI 41


>Z83228-10|CAB05732.2|  585|Caenorhabditis elegans Hypothetical
           protein F52F12.1a protein.
          Length = 585

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
 Frame = +3

Query: 156 SVGIEADSEKLKKVISELNGK---NVEELIEA 242
           SVG  AD++K  K I+++NGK   +V+EL+++
Sbjct: 297 SVGKWADAKKQLKKIAKMNGKSNVDVDELVDS 328


>Z83228-1|CAC70093.1|  568|Caenorhabditis elegans Hypothetical
           protein F52F12.1b protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
 Frame = +3

Query: 156 SVGIEADSEKLKKVISELNGK---NVEELIEA 242
           SVG  AD++K  K I+++NGK   +V+EL+++
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELVDS 311


>AF110415-1|AAF21932.1|  568|Caenorhabditis elegans organic cation
           transporter 1 protein.
          Length = 568

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
 Frame = +3

Query: 156 SVGIEADSEKLKKVISELNGK---NVEELIEA 242
           SVG  AD++K  K I+++NGK   +V+EL+++
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELVDS 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,813,157
Number of Sequences: 27780
Number of extensions: 110242
Number of successful extensions: 326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)