Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L12
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    29   0.46 
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    28   1.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   1.4  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   2.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.3  
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.3  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   4.3  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   5.7  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   5.7  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   5.7  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   5.7  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   7.5  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   7.5  
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    25   7.5  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   7.5  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   7.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.5  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   10.0 
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    25   10.0 

>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 15  SVPKKKEKINKVDSNNSGANDKSLRLLEKELQDLKRTNSRSETLKVPAKNVDILKNRKP 191
           S+   ++K+N+V  ++S       + L + LQD    N   + +  P    D+LK   P
Sbjct: 261 SILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAANDEDQFMANPVLPEDVLKEAVP 319


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 105 LQDLKRTNSRSETLKVPAKNVDILKNRKPQVHTSTPKPRPVGIKESQSILVKTIE 269
           L+ +K  N+  E  KVP K    L + K Q   + PK +P+  + S+   V +I+
Sbjct: 722 LEAIKARNAPKEVPKVPEKAPFFLPSLKDQSEATVPK-QPIATEISKPTAVASIK 775


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 26/143 (18%), Positives = 52/143 (36%)
 Frame = +3

Query: 30   KEKINKVDSNNSGANDKSLRLLEKELQDLKRTNSRSETLKVPAKNVDILKNRKPQVHTST 209
            K +I ++   N   N+KS++      + LKR             +V ILK +K ++    
Sbjct: 1005 KTEIQEMRLTNQKMNEKSIQQEGSLSESLKRVKKLERENSTLISDVSILKQQKEELSV-- 1062

Query: 210  PKPRPVGIKESQSILVKTIEKKIPERRLITKENKEINREVXXXXXXXXXXXXXXXXXXXX 389
                   +K  Q + +  +E+K+       K+  ++ +E+                    
Sbjct: 1063 -------LKGVQELTINNLEEKVNYLEADVKQLPKLKKELESLNDKDQLYQLQATKNKEL 1115

Query: 390  XXXXXXNMNNIKNGSSNKTSSEE 458
                   +NNIK+ +    + EE
Sbjct: 1116 EAKVKECLNNIKSLTKELENKEE 1138


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = +3

Query: 60  NSGANDKSLRLLEKELQDLKRTNSRSETLKVPAKNVDILKNRKPQVHTSTPKPRPVGIKE 239
           N+G N    R         ++T SR+   +   + V    NRKP  + ++  P     ++
Sbjct: 3   NNGDNMSRERFSSNHSMQRQKTESRANFSR---RLVPSDSNRKPVPNGASNSPLS---RD 56

Query: 240 SQSILVKTIEKKIPERRLITKE 305
           + S L+ TIE  I +  ++TKE
Sbjct: 57  AASHLISTIETSIMKLLVVTKE 78


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 12  DSVPKKKEKINKV---DSNNSGANDKSLRLLEKELQDLKRTNSRSET 143
           D+V  K E++ K    +   S    +S +  EK+  DLK +NS  ET
Sbjct: 97  DAVSSKDEELRKHAKGEGKRSKNRKRSSKHSEKQAVDLKSSNSSQET 143


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 320 QRSERSKEQQYKRGQGKRCNR*RTTTERKK 409
           +R +R KEQ+ K+ Q K   + + T  RKK
Sbjct: 135 ERKQRLKEQREKKEQKKEQKKEKKTERRKK 164


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 12  DSVPKKKEKINKVDSNNSGANDKSLRLLEKELQDLKRTNSRSET 143
           DS+ KKK+ + K+D      N K     +KE+   K+ +   +T
Sbjct: 723 DSLTKKKDPLTKIDHTIDSPNTKE---KDKEISSWKKASEYMDT 763


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 105 LQDLKRTNSRSETLKVPAKNVDILKNRKPQVHTSTPKPRPV 227
           L + K T  ++ +  VP+    + K+ + +V T  P+ +PV
Sbjct: 395 LYESKGTVEKAVSATVPSAGAQVQKHNEEKVETPKPEAQPV 435


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 9   PDSVPKKKEKINKVDSNNSGANDKSLRLLEKELQDLKRTNSR 134
           PD    +K    K ++NN    +KSL+   K+L D+  ++ +
Sbjct: 141 PDQERSRKINPQKGNNNNLLKENKSLKTTAKDLSDISSSSMK 182


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/69 (21%), Positives = 30/69 (43%)
 Frame = +3

Query: 99  KELQDLKRTNSRSETLKVPAKNVDILKNRKPQVHTSTPKPRPVGIKESQSILVKTIEKKI 278
           K L  L++TNS + + K P ++    + +KP +       +       Q  +   +    
Sbjct: 10  KRLAKLQQTNSEANSSKEPKESNIAPEPKKPDLKKRFIGSKATTSNSEQKEISPPVTSGA 69

Query: 279 PERRLITKE 305
           P+ RL +K+
Sbjct: 70  PKHRLFSKD 78


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 3   TRP-DSVPKKKEKINKVDSNNSGANDKS 83
           T+P ++VPK K   +K++ N  G+N  +
Sbjct: 53  TKPIEAVPKMKTNASKIEINKEGSNSNT 80


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 15  SVPKKKEKINKVDSNNSGANDKSLRLLEKELQDLKRTNSRSETLKV 152
           S    KEK    +  +  ++++SLR LE E Q +  T   +  L++
Sbjct: 762 STAADKEKSQNHEKKSLNSDNQSLRPLENENQSVSSTQGSNSPLEL 807


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 72  NDKSLRL--LEKELQDLKRTNSRSETLKVPAKNVDILKNR 185
           ++KS+ +  LEK L  +    SRS    VP   +D+++ R
Sbjct: 294 DEKSVEISRLEKLLGKVMEVKSRSMEFTVPEAEIDVIEKR 333


>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = +3

Query: 102 ELQDLKRTNSRSETLKVP----AKNV--DIL-KNRKPQVHTSTPKPRPVGIKE 239
           +L  +K T    + LKV     A NV  D++  N K  +HTS  KP+ V +++
Sbjct: 148 DLLTIKETFKSFDGLKVAWVGDANNVLHDLMIANAKVGIHTSVAKPKDVNVRD 200


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 27  KKEKINKVDSNNSGANDKSLRLLEKELQDLK 119
           KK+  N V ++ S   D SL+LLE ++ DLK
Sbjct: 562 KKQPTN-VSTDFSTMIDSSLQLLESKISDLK 591


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +3

Query: 129 SRSETLKVPAKN------VDILKNRKPQVHTSTPKPRPVGIKESQSILV 257
           S S ++  PAKN      VD+L    P+ HT+   P+    KE+   +V
Sbjct: 293 SPSRSIVSPAKNIVGSTPVDVLSKLTPEFHTALSSPKWKDRKEALESMV 341


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/82 (18%), Positives = 36/82 (43%)
 Frame = +3

Query: 9   PDSVPKKKEKINKVDSNNSGANDKSLRLLEKELQDLKRTNSRSETLKVPAKNVDILKNRK 188
           P +VP  +  +N ++  NS +ND    +  + ++   +T        +P K+++ L    
Sbjct: 60  PLNVPLFELPVNSLELQNSVSNDMFKHVYSQNVELNHKTQVDFTEQLIPKKSLNKLNGTL 119

Query: 189 PQVHTSTPKPRPVGIKESQSIL 254
            +  +  P    + + E+ + L
Sbjct: 120 RETMSRMPSFESISLSETSNAL 141


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 90  LLEKELQDLKRTNSRSETLKVPAKNV-DILKNRKPQVHTSTPKPRPVGIKES 242
           LLEK +    ++N+ S T + P+K     + N     +TS+    PV  K S
Sbjct: 125 LLEKAMHPGHKSNANSPTSESPSKGFGSFINNHILHKNTSSHPSSPVNGKSS 176


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 168 DILKNRKPQVHTSTPKPRPVGIKESQSILVK-TIEKKIPERRLITKENKEINR 323
           +ILK++K   + + P+P  + +   +  L K T+ +K+ + +  +  N+  +R
Sbjct: 28  EILKSKKKTQNENDPEPMDISMSPDEKNLKKSTVRRKLRKSKPNSSSNQVSSR 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,128
Number of Sequences: 5004
Number of extensions: 24109
Number of successful extensions: 113
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)