Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L12
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0663 + 21653536-21653541,21654027-21654212,21654316-216543... 30 1.4
02_02_0318 - 8913463-8913765,8913860-8913946 29 2.5
11_06_0679 - 26227654-26227770,26234067-26236217 29 3.3
06_03_1181 - 28227746-28229115,28229130-28229307 29 3.3
04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 28 4.4
09_02_0433 + 9346464-9347304,9347848-9348470,9348578-9349282 28 5.8
12_02_0783 + 23125786-23126037,23126867-23127784 27 7.7
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142... 27 7.7
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 27 7.7
>12_02_0663 +
21653536-21653541,21654027-21654212,21654316-21654393,
21654581-21654694,21654799-21654865,21654954-21655015,
21655123-21655262,21655552-21655678,21655758-21655872,
21656111-21656199,21656593-21656733,21657067-21657192,
21657655-21657714,21658285-21658443
Length = 489
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 27 KKEKINKVD--SNNSGANDKSLRLLEKELQDLKRTNSRSETLKVPAKNVDILKNRKPQVH 200
K+E N++D N A + LE E+ DL++ + ETL+ ++++ + K+ +
Sbjct: 412 KQELANELDLVRNQLSAEEARASQLENEISDLQQRLQKMETLEKESESLRLEKDAESDDS 471
Query: 201 TSTPKPRP 224
+S RP
Sbjct: 472 SSGSNQRP 479
>02_02_0318 - 8913463-8913765,8913860-8913946
Length = 129
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 45 KVDSNNSGANDKSLRLLEKELQDLKRTNSRSETLKVPAKNVDIL 176
+ S ++ A+DKSLRL +L++ T+ +E+L VP N+ +L
Sbjct: 57 EAQSLSTAADDKSLRLHGGQLRNYSSTSMSNESL-VPNHNIGLL 99
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 15 SVPKKKEK-INKVDSNNSGANDKSLRLLEKELQDLKRTNSRSETLKVPAKNVDILKNRKP 191
++P +EK ++ + G N + + + QDL RT + ++ + + IL P
Sbjct: 82 AIPGAREKQSDQAKGDAQGENKEGESIKATQAQDLPRTQAPNQVQNLSQAQIPILTQNTP 141
Query: 192 QVHTSTP 212
Q + P
Sbjct: 142 QAQITIP 148
>06_03_1181 - 28227746-28229115,28229130-28229307
Length = 515
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 12 DSVPKKKEK-INKVDSNNSGANDKSLRLLEKELQDLKRTNSRSETLKVPAKNVDILKNRK 188
D V + +EK ++ + G N + + + QDL RT + S+ + IL
Sbjct: 56 DQVIRAREKQSDQAKGDAQGENKEGESIKATQAQDLPRTQAPSQVQNPSQAQIPILTQNT 115
Query: 189 PQVHTSTP 212
PQ + P
Sbjct: 116 PQAQITIP 123
>04_03_0850 -
20269047-20270595,20270708-20270751,20271248-20271329,
20274027-20274115
Length = 587
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 57 NNSGANDKSLRLLEKELQDLKRTNSRSETLKVPAKNVDILKNRKPQVHTSTPKPRPVG 230
N A+ + ++ + +QD+ S + +PA + K RK ++ TS+P+ PVG
Sbjct: 268 NVRSASPTTTKVQKTRIQDVISNKSSEASEDLPAGPA-VAKQRKGKMKTSSPRAVPVG 324
>09_02_0433 + 9346464-9347304,9347848-9348470,9348578-9349282
Length = 722
Score = 27.9 bits (59), Expect = 5.8
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +3
Query: 54 SNNSGANDKSLRLLEKELQDLKRTNSRSETLKVPAKNVDILKNRKPQVHTSTPK----PR 221
SNN G+ D+ LLE E +LK T V++L P++ S PK P
Sbjct: 181 SNNGGSTDRVKELLETE-NELKETALHEAVRIGDNAMVELLLQEYPEL-ASFPKDGTSPL 238
Query: 222 PVGIKESQSILVKTIEKK 275
+ I ++I+V+T+ K
Sbjct: 239 FLAILLQENIIVETLYSK 256
>12_02_0783 + 23125786-23126037,23126867-23127784
Length = 389
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 156 PAPLMFHSGNLSF*DLVTPFLINAMIYHL 70
P PL+FH G L+F L TP AM+ L
Sbjct: 107 PRPLVFHDGRLAF--LPTPLAAAAMLVWL 133
>11_06_0155 -
20712601-20713553,20713618-20714000,20714240-20714271,
20714315-20714571,20714699-20714724,20714894-20715081,
20715302-20715595,20715714-20715752,20715827-20715944,
20716076-20716157,20716610-20716668,20717156-20717221,
20717358-20717447,20718142-20718236
Length = 893
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 9 PDSVPKKKEKINKVDSNNSGANDKSLRLLEKELQDLKRTNSR 134
PD VP K ++ +++NSG ++ S L ++ QD+K+ +R
Sbjct: 229 PDIVPSKVGGKDREENDNSGCDEWS--LFDEYSQDIKKKRAR 268
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 183 RKPQVHTSTPKPRPVGIKESQSILVKTIEKKIPERRLITK 302
R+PQ T P P + +QS + + E+K+P R T+
Sbjct: 194 RRPQTSTEAA-PAPTTRRRAQSTVAASAEEKVPRGRRTTR 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,664,656
Number of Sequences: 37544
Number of extensions: 142590
Number of successful extensions: 480
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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