Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L09
         (595 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.28 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   1.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   1.5  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.5  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.5  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.5  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 155  PSTTADVGETRTTSSHRKTA*TLAKLYSVQPDRALQYRHQAVAPATLELAMHLLYQQLLE 334
            PSTT       TTS+  +   T+++L   + D    Y H++ +   + +  HL+ Q    
Sbjct: 1177 PSTTNHWQTKTTTSTTTRPTTTVSQLIDDKCDSGQYYPHESCSSFYVCVNGHLVPQNCAP 1236

Query: 335  DLH 343
             LH
Sbjct: 1237 GLH 1239


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 14  SDPAPSDRTAPSTCSRLNV 70
           S P PSD+   ST S +NV
Sbjct: 48  SSPTPSDKLNTSTTSSVNV 66


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 460 PDRVQSAQSWCAPGTRRHRFYCTCSTPPT 374
           PD +Q A  + APG   +  + T  TP T
Sbjct: 288 PDHIQQATPYSAPGP-TYSTWSTVQTPTT 315


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 212 QSSCEMKLFWFP 177
           +S+C+M + WFP
Sbjct: 125 KSTCKMDITWFP 136


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 212 QSSCEMKLFWFP 177
           +S+C+M + WFP
Sbjct: 125 KSTCKMDITWFP 136


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 212 QSSCEMKLFWFP 177
           +S+C+M + WFP
Sbjct: 125 KSTCKMDITWFP 136


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 212 QSSCEMKLFWFP 177
           +S+C+M + WFP
Sbjct: 125 KSTCKMDITWFP 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,104
Number of Sequences: 336
Number of extensions: 3651
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)