Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L09
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   3.6  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   3.6  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.8  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    25   6.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.3  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    25   8.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.3  

>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
 Frame = -2

Query: 504 ASATSRHKFWT---RHTSRTGFSQHSPGALLVP---DATGFT-ALAPLPPRAHLTV 358
           A+    H  WT   R   +TG S++ PG L +P   +A+ F   L P   + H+T+
Sbjct: 369 ATIKEYHTVWTATPRLDPKTGLSRYRPGGLGIPPETEASHFEHLLRPYMEKYHMTL 424


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 264 IVIRRWLQQPWSWQCTCCTNSYW 332
           I+ +R+L+  ++  C CC  SYW
Sbjct: 26  ILQQRFLRACFALLCLCCITSYW 48


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 362 QSFNDVSVGPPIAVGTAGALPTPGLLEPPPDDDTAALGP 246
           Q F  + V    A G A ALP+PG+  P  D D A   P
Sbjct: 2   QFFGSLFVSLLGAAGLANALPSPGI--PSNDKDLAIYPP 38


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 512 VLKHRRRLDISFGQGTPPGPGSVSTVLVRSW 420
           +LKH++R+ I    G   G  ++  +L ++W
Sbjct: 23  LLKHQQRVLIGLAGGPGSGKSTLCAILAKAW 53


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 249  TERCSIVIRRWLQQPWSWQCTCCTNS 326
            +E CS+   R+    W  QC  C NS
Sbjct: 2553 SELCSLCDSRFSLMEWRSQCRACGNS 2578


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 186 LVSPTSAVVEGHAHTFGCYERPAL 115
           L S +SA V+G A   GC E P L
Sbjct: 115 LASSSSAPVKGFASLQGCIENPQL 138


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 341 VGPPIAVGTAGALPTPGLLEPPPDDDTAALGPAAP 237
           + PP+  G   A P P     PP     A  PAAP
Sbjct: 455 IAPPLPAGMPAAPPLPPAAPAPP--PAPAPAPAAP 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,685
Number of Sequences: 5004
Number of extensions: 55278
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)