Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L09
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 33 0.17
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 32 0.40
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 31 0.92
02_05_0231 + 27037091-27039466 30 1.2
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 30 1.6
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 29 2.1
10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869 29 2.8
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 28 4.9
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 28 4.9
09_02_0513 - 10105746-10106438,10106523-10107040,10107156-101076... 28 6.5
11_04_0403 + 17298498-17298713,17298799-17299696,17299874-173005... 27 8.5
09_01_0037 - 604001-604957 27 8.5
07_01_0516 - 3850252-3852870 27 8.5
02_04_0278 - 21507288-21507726,21507893-21507972,21508587-215088... 27 8.5
02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058 27 8.5
02_04_0170 + 20576149-20576889 27 8.5
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 27 8.5
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 76 MEAPEQGPCRGLYQRWAFIAPKGMCVPFNYGGCRGNQNNFISQEDC--MNTCKV 231
+E P +G + +F P G C +N+G C +Q + QE C M C V
Sbjct: 783 LECPREGQVISNIKFASFGTPSGTCGNYNHGECSSSQALAVVQEACVGMTNCSV 836
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 31.9 bits (69), Expect = 0.40
Identities = 27/82 (32%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Frame = -3
Query: 467 TPPGPGSV--STVLVRSWYPTPQVLLHLLHSPHGLT*QSFNDVSVGPPIAVGTAGALPTP 294
TPP P L RS P P H P G F S P + P P
Sbjct: 14 TPPAPAPAPPQVFLRRSVLPPPPAPHHA-PPPPGAHVHYFRAASPIPIFRAAASSRPPRP 72
Query: 293 GLLEPPPDDDTAALGPAAPSIT 228
PPP TA PAAP++T
Sbjct: 73 ----PPPSTTTAPPPPAAPAVT 90
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 335 PPIAVGTAGALPTPGLLEPPPDDDTAALGPAAPSIT 228
PP+ GTA P P +P P T A G P T
Sbjct: 26 PPLLTGTAVPPPPPAAAQPQPQQATVAEGDPPPPAT 61
>02_05_0231 + 27037091-27039466
Length = 791
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -2
Query: 468 HTSRTGFSQHSPGALLVPDATGFTALAPLPPRAHLTVIQ*RQCRSSNSC 322
HTS T PGA ++ GF A + PRAHL + Q C C
Sbjct: 233 HTSSTAGGNFVPGANVM--GNGFGTAAGMAPRAHLALYQ--VCSEDRGC 277
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 302 PTPGLLEPPPDDDTAALGPA 243
PTP ++PPPD +T+A+ PA
Sbjct: 133 PTPPPVQPPPDRETSAMVPA 152
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -3
Query: 353 NDVSVGPPIAVGTAGALPTPGLLEPPPDDDTAALGPAAP 237
N V PP AG +P P + PPP A P P
Sbjct: 631 NAAPVPPPSMANGAGPVPPPIAVAPPPAPPIAGAAPPPP 669
>10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869
Length = 526
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 302 PTPGLLEPPPDDDTAALGPAAP 237
PTP LL PPP + A L P P
Sbjct: 8 PTPLLLPPPPPQEPAPLSPPPP 29
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 287 LEPPPDDDTAALGPAAPSITLQ 222
LE PP DD+A++ P+ +ITL+
Sbjct: 1112 LEEPPQDDSASVEPSENTITLE 1133
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 335 PPI-AVGTAGALPTPGLLEPPPDDDTAALGP 246
PP+ A A A P+P L PPP+ ++ L P
Sbjct: 78 PPLDADAAAEAAPSPALTSPPPNPSSSPLPP 108
>09_02_0513 -
10105746-10106438,10106523-10107040,10107156-10107695,
10107791-10108103
Length = 687
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 444 QHSPGALLVPDATGFTALAPLPPRAHLTVIQ 352
Q P A+ +PD G T L HL VIQ
Sbjct: 326 QSMPSAMYIPDKEGLTPLHVAAKMGHLDVIQ 356
>11_04_0403 +
17298498-17298713,17298799-17299696,17299874-17300592,
17301714-17301806,17301884-17302051
Length = 697
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 385 WSKCSKTCGVGYQERTRTVLTEPGPGGVPCP 477
W K + G+G + +TV+ EPG G P P
Sbjct: 457 WHKNDISFGLGTNDTRKTVVPEPGLGKPPRP 487
>09_01_0037 - 604001-604957
Length = 318
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 335 PPIAVGTAGALPTPGLLEPPPDDDTAALGPAAPSITLQ 222
PP A + +L PGL P PD T P+ P++ LQ
Sbjct: 198 PPPATSLSLSLSLPGLDHPHPDPST----PSEPAVQLQ 231
>07_01_0516 - 3850252-3852870
Length = 872
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 329 IAVGTAGALPTPGLLEPPPDDDTAALGPAAP 237
+A+ T+ A P P LL P P + L P P
Sbjct: 1 MAISTSSAAPPPRLLPPQPPPTSRPLPPPPP 31
>02_04_0278 -
21507288-21507726,21507893-21507972,21508587-21508840,
21508988-21509180
Length = 321
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 338 GPPIAVGTAGALPTPGLLEPPPDDDTAALGPAAP 237
G P A+ A A+P+PG PP A G P
Sbjct: 267 GAPAAITAAAAVPSPG-AGSPPSSSAALFGARRP 299
>02_04_0171 + 20581995-20582354,20582509-20583141,20584954-20585058
Length = 365
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -3
Query: 332 PIAVGTAGA--LPTPGLLEPPPDDDTAALGPAAP 237
P+A AG LP P + PPP T A A P
Sbjct: 228 PVAPPQAGTWPLPAPAAMPPPPPPPTGAAAVAPP 261
>02_04_0170 + 20576149-20576889
Length = 246
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -3
Query: 332 PIAVGTAGA--LPTPGLLEPPPDDDTAALGPAAP 237
P+A AG LP P + PPP T A A P
Sbjct: 109 PVAPPQAGTWPLPAPAAMPPPPPPPTGAAAVAPP 142
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 344 SVGPPIAVGTAGALPTPGLLEPPPDDDTAALGPAAPSIT 228
+ PP A + + P PG L PP AA P+ PS T
Sbjct: 22 TAAPPPASNNSSSPPAPGSLSPPSLTPPAA--PSPPSTT 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,270,236
Number of Sequences: 37544
Number of extensions: 477728
Number of successful extensions: 1829
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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