Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L09
(595 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 26 0.32
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 25 0.56
AB264335-1|BAF44090.1| 87|Apis mellifera ecdysone-induced prot... 25 0.74
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 25 0.74
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 23 2.3
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 23 3.0
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 22 3.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.2
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 22 5.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 6.9
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 6.9
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 21 6.9
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 9.1
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 9.1
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 9.1
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 21 9.1
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 21 9.1
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 25.8 bits (54), Expect = 0.32
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 335 PPIAVGTAGALPTPGLLEPPPDDDTAAL 252
PP AV A+PT +LE PD T L
Sbjct: 98 PPEAVSYNVAVPTKSILEKKPDVTTVEL 125
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 25.0 bits (52), Expect = 0.56
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 297 SWQCTCCTNSYWRTYTDVIE*LSSEPVGGVEQVQ 398
S CT SY T DV+ PV GVE+ +
Sbjct: 172 SQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAE 205
Score = 21.0 bits (42), Expect = 9.1
Identities = 10/56 (17%), Positives = 21/56 (37%)
Frame = -2
Query: 498 ATSRHKFWTRHTSRTGFSQHSPGALLVPDATGFTALAPLPPRAHLTVIQ*RQCRSS 331
A + +W + + S ++ +G A +P P +I+ + R S
Sbjct: 323 AAVNYTYWGARAKKKSKKKESDDKKVISSKSGSKANSPFPGSTEADIIELQDLRMS 378
>AB264335-1|BAF44090.1| 87|Apis mellifera ecdysone-induced protein
75 protein.
Length = 87
Score = 24.6 bits (51), Expect = 0.74
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 10 QQRPCTERQDCTIDMLTAKR 69
Q RPCT+ Q C+I + R
Sbjct: 51 QYRPCTKNQQCSILRINRNR 70
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 24.6 bits (51), Expect = 0.74
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 10 QQRPCTERQDCTIDMLTAKR 69
Q RPCT+ Q C+I + R
Sbjct: 100 QYRPCTKNQQCSILRINRNR 119
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 23.0 bits (47), Expect = 2.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 398 LHLLHSPHGLT*QSFNDVSVGPPIAVGTA 312
LH LH HGL+ + S GP A A
Sbjct: 137 LHGLHGLHGLSSSAPTGSSCGPGAAAAAA 165
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 22.6 bits (46), Expect = 3.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 335 PPIAVGTAGALPTPGLLEPPPD 270
PP AV A+PT +LE P+
Sbjct: 98 PPEAVSYNVAVPTKSILEKKPE 119
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 22.2 bits (45), Expect = 3.9
Identities = 6/13 (46%), Positives = 6/13 (46%)
Frame = +3
Query: 279 WLQQPWSWQCTCC 317
W Q PW W C
Sbjct: 95 WQQYPWQWGLGIC 107
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.2
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -3
Query: 212 QSSCEMKLFWFP 177
+S+C+M + WFP
Sbjct: 108 KSTCKMDIAWFP 119
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 21.8 bits (44), Expect = 5.2
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = +3
Query: 309 TCCTNSYWRTYT 344
TCCT +W T
Sbjct: 199 TCCTTXWWSXXT 210
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.9
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -3
Query: 212 QSSCEMKLFWFP 177
+S+C+M + WFP
Sbjct: 108 KSTCKMDVAWFP 119
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.4 bits (43), Expect = 6.9
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 12 AATLHRATGLHHRHAHG 62
A + R T LH H HG
Sbjct: 85 AQSWQRLTSLHELHVHG 101
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 6.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 198 LTGRLHEHLQSYTRCSRTERCS 263
L R H+ + +R SR RCS
Sbjct: 217 LRNRTHDFQHTSSRYSRERRCS 238
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 9.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 424 ERTRTVLTEPGPGGVP 471
E +T PGP GVP
Sbjct: 323 ESMKTARENPGPPGVP 338
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.0 bits (42), Expect = 9.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 424 ERTRTVLTEPGPGGVP 471
E +T PGP GVP
Sbjct: 323 ESMKTARENPGPPGVP 338
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.0 bits (42), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 447 SQHSPGALLVPDATGFTALA 388
S+H ++L D GFTA++
Sbjct: 267 SRHENVSILYADIVGFTAIS 286
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 21.0 bits (42), Expect = 9.1
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -3
Query: 335 PPIAVGTAGALPTPGLLEPPPDDD 264
PPI A T E PPD D
Sbjct: 641 PPIMPRVQNATDTTNFDEYPPDSD 664
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.0 bits (42), Expect = 9.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 424 ERTRTVLTEPGPGGVP 471
E +T PGP GVP
Sbjct: 262 ESMKTARENPGPPGVP 277
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,484
Number of Sequences: 438
Number of extensions: 4435
Number of successful extensions: 21
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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