Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L08
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817...   171   4e-43
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392...   164   4e-41
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248...   160   5e-40
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554...   154   4e-38
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227...    85   4e-17
11_06_0110 + 20212221-20214011,20214072-20214368                       29   2.1  
06_03_1219 - 28491185-28494415                                         29   2.1  
03_02_0389 - 8036575-8036841,8037011-8037133,8037516-8037736,803...    28   4.8  
08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888...    27   6.4  
04_03_0051 + 10199702-10199839,10199869-10200642,10202481-102030...    27   6.4  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    27   8.5  
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689...    27   8.5  
06_03_1217 - 28484007-28487237                                         27   8.5  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    27   8.5  

>07_01_0971 +
           8169197-8169311,8170351-8170458,8170533-8170725,
           8170811-8171069,8171151-8171207,8171433-8171480,
           8171571-8171657,8171743-8171800,8171891-8171958,
           8172066-8172161,8172244-8172291,8172658-8172696,
           8172782-8172868,8173136-8173147
          Length = 424

 Score =  171 bits (415), Expect = 4e-43
 Identities = 83/139 (59%), Positives = 101/139 (72%), Gaps = 2/139 (1%)
 Frame = +1

Query: 91  EVFFEEKFSDDSWESNWVYSEHPGKE--FGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 264
           EVFF+EKF +D WES WV SE    E   G++  T+GK+  D E DKG+QTSED RFYA+
Sbjct: 30  EVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPE-DKGIQTSEDYRFYAI 87

Query: 265 SRKFKPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDIC 444
           S ++  FSN+ K LV+QFSVKHEQ +DCGGGY+K+    +DQK   G+TPY IMFGPDIC
Sbjct: 88  SAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDIC 147

Query: 445 GPGTKKVHVIFSYKGKNHL 501
           G  TKKVH IF+   KNHL
Sbjct: 148 GYSTKKVHTIFTKNDKNHL 166


>03_06_0563 -
           34738732-34738890,34738965-34739009,34739154-34739201,
           34739291-34739386,34739467-34739534,34739633-34739690,
           34739783-34739869,34740004-34740051,34740360-34740416,
           34740525-34740783,34740877-34741102,34741168-34741275,
           34741885-34741987
          Length = 453

 Score =  164 bits (398), Expect = 4e-41
 Identities = 87/175 (49%), Positives = 108/175 (61%), Gaps = 13/175 (7%)
 Frame = +1

Query: 16  LAVN*KMKSAVXXXXXXXXXXXXNCEVFFEEKFSDDSWESNWVYSE--HPGKEFGKFKLT 189
           +A+  +  +AV              EVFF+EKF DD WE  WV SE        G++  T
Sbjct: 1   MAIPRRSAAAVAAVVALASVAAVAGEVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHT 59

Query: 190 AGKFYNDAEADKGL-----------QTSEDARFYALSRKFKPFSNEGKPLVVQFSVKHEQ 336
           +GK+Y DA+ DKG+           QTSED RFYA+S K+  FS++ K LV+QFSVKHEQ
Sbjct: 60  SGKWYGDAD-DKGMCEVTLLLCAGIQTSEDYRFYAISAKYPEFSSKDKTLVLQFSVKHEQ 118

Query: 337 DIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHL 501
            +DCGGGY+K+    +DQK   GETPY IMFGPDICG  TKKVH I +  GKNHL
Sbjct: 119 KLDCGGGYVKLLGGDVDQKKFGGETPYSIMFGPDICGYATKKVHAILTKNGKNHL 173


>01_06_1654 -
           38924090-38924101,38924183-38924215,38924737-38924829,
           38924909-38924965,38925048-38925143,38925237-38925304,
           38925429-38925486,38925572-38925658,38925935-38925982,
           38926060-38926116,38926200-38926458,38926666-38926858,
           38926991-38927098,38927849-38927957
          Length = 425

 Score =  160 bits (389), Expect = 5e-40
 Identities = 74/138 (53%), Positives = 101/138 (73%), Gaps = 2/138 (1%)
 Frame = +1

Query: 91  EVFFEEKFSDDSWESNWVYSEHPGKE--FGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 264
           EV FEE+F +D WES WV S+    E   G FK TAG++  D + DKG+QT+ DAR +A+
Sbjct: 28  EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDPD-DKGIQTTLDARHFAI 85

Query: 265 SRKFKPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDIC 444
           S K   FSN+G+ LV+Q+S+K EQDI+CGGGY+K+    ++QK   G+TPY +MFGPDIC
Sbjct: 86  SAKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDIC 145

Query: 445 GPGTKKVHVIFSYKGKNH 498
           G  TKK+H+I SY+G+N+
Sbjct: 146 GTQTKKLHLILSYQGQNY 163


>05_06_0014 +
           24854462-24854570,24854958-24855065,24855240-24855432,
           24855892-24856150,24856236-24856292,24856370-24856417,
           24856725-24856811,24856885-24856942,24857084-24857151,
           24857279-24857374,24857483-24857539,24857906-24857952,
           24858184-24858210,24858312-24858504
          Length = 468

 Score =  154 bits (373), Expect = 4e-38
 Identities = 72/138 (52%), Positives = 97/138 (70%), Gaps = 2/138 (1%)
 Frame = +1

Query: 91  EVFFEEKFSDDSWESNWVYSEHPGKE--FGKFKLTAGKFYNDAEADKGLQTSEDARFYAL 264
           EV FEE+F DD W S WV S+    E   G FK TAG +  D + D+G+QT+ DA+ +A+
Sbjct: 28  EVIFEERFDDD-WGSRWVKSDWKKSEGKAGTFKHTAGSYSGDPD-DRGIQTTSDAKHFAI 85

Query: 265 SRKFKPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVFDCRLDQKDMHGETPYEIMFGPDIC 444
           S KF  FSN+ + LVVQ+S+K EQDI+CGG Y+K+    ++QK   G+TPY  MFGPDIC
Sbjct: 86  SAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGPDIC 145

Query: 445 GPGTKKVHVIFSYKGKNH 498
           G  TKK+H+I SY+G+N+
Sbjct: 146 GDQTKKLHLILSYQGQNY 163


>04_03_0812 -
           19922208-19922357,19922448-19922564,19922681-19922752,
           19922864-19923993,19924939-19925008,19925125-19925199
          Length = 537

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 54/133 (40%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
 Frame = +1

Query: 100 FEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEDARFYALSRKF- 276
           F E F D+S+E  WV S   GK+  K      K  +D   D GL  SE A+ YA+ ++  
Sbjct: 27  FYEPF-DESFEGRWVLS---GKDDYKGVWKHEK--SDGHEDYGLLVSEKAKKYAIIKELD 80

Query: 277 KPFSNEGKPLVVQFSVKHEQDIDCGGGYLKVF---DCRLDQKDMHGETPYEIMFGPDICG 447
           +P + +   +V+QF V+ +  ++CGG YLK     D   D K+   ETPY IMFGPD CG
Sbjct: 81  EPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPDKCG 140

Query: 448 PGTKKVHVIFSYK 486
             T KVH I  +K
Sbjct: 141 -STNKVHFILKHK 152


>11_06_0110 + 20212221-20214011,20214072-20214368
          Length = 695

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -3

Query: 347 QSMSCSCFTLNCT--TKGLPSLLNGLNFLDRA*NLASSDVCKPLSASASL*NFPAVNLNL 174
           ++MS     L+C      +P +   L  LD + NL S DV + +     L      N  L
Sbjct: 526 ENMSLEKLYLDCNHIADRIPRMPRNLMLLDISYNLISGDVPQSICELQKLNGLDLSNNLL 585

Query: 173 PNSFPGCSLYTQ 138
              FP CSL ++
Sbjct: 586 EGEFPQCSLMSR 597


>06_03_1219 - 28491185-28494415
          Length = 1076

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 158 GCSLYTQFDSHESSENFSSKNTSQFIDEIANKLAIAST 45
           G SL+    S   ++N SSK+T  F+ E+A + A A T
Sbjct: 741 GASLFDSMSSELYNDNDSSKDTIFFMSEVAGEAAKAVT 778


>03_02_0389 -
           8036575-8036841,8037011-8037133,8037516-8037736,
           8037788-8037812,8038344-8038445,8038556-8038951,
           8039647-8039699,8039813-8039897,8040220-8040370,
           8040457-8040464
          Length = 476

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 184 LTAGKFYNDAEADKGLQTSEDARFYALSRKFK-PFSNEGKPLVVQFSV 324
           L AG +      + GL  S  ARFYA+ R  +   S++     VQFSV
Sbjct: 12  LVAGGYLVLERPNAGLVLSTSARFYAIVRPLRDELSHDSWAWAVQFSV 59


>08_02_1620 - 28288152-28288353,28288469-28288557,28288634-28288828,
            28289082-28289423,28290227-28291672,28292590-28292666,
            28293160-28294509,28295921-28296029,28296896-28297007,
            28297800-28297957
          Length = 1359

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -3

Query: 251  LASSDVCKPLSASASL*NFPAVNLNLPNSFPGCS--LYTQF-DSHESSENFSSKNTSQF 84
            +A S   K + ASA +     + + +P S+P CS  L  +F D   +S++ S+K  S+F
Sbjct: 1248 VAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDDLSTKARSKF 1306


>04_03_0051 +
           10199702-10199839,10199869-10200642,10202481-10203077,
           10237046-10237159
          Length = 540

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 181 KLTAGKFYNDAEADKGLQTSEDARFYALSRKF 276
           ++ AGK Y   E D   +T E ARF  + R++
Sbjct: 187 RMVAGKQYYGGEGDAEAETEEAARFREMVREY 218


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 179 NLPNSFPGCSLYTQFDSHESSENFSSKNTSQFIDEIANKLAIASTADF 36
           N PN+FP  S    F   + S  F S   S   + I++  A AS++ F
Sbjct: 457 NPPNAFPSASANNPFAPKQPSTGFGS--ISSVFNSISSNTAPASSSPF 502


>09_02_0286 -
           6898041-6898144,6898881-6899005,6899158-6899207,
           6899245-6899386,6899951-6900020,6900077-6900216,
           6900291-6900365,6901083-6904723
          Length = 1448

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 317 NCTTKGLPSLLNGLNFLDRA*NLASSDVCKPLSASASL*NFPAVNLNLPNSFPGCSL 147
           N  + G+P  L GLNFL    +++++++  P+ +S  L  FP    +  N   G  L
Sbjct: 748 NQLSGGIPPGLGGLNFLADF-DVSNNNLTGPIPSSGQLTTFPPSRYDNNNGLCGIPL 803


>06_03_1217 - 28484007-28487237
          Length = 1076

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 317 NCTTKGLPSLLNGLNFLDRA*NLASSDVCKPLSASASL*NFPAVN 183
           N  T  +PS LN LNFL    N+A +D+  P+        FP  N
Sbjct: 623 NRLTGTIPSALNKLNFL-AVFNVAHNDLEGPIPTGGQFDAFPPKN 666


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 344 SMSCSCFTLNCTTKGLPS-LLNGLNFLDRA 258
           S +CSC     TT  LPS L +GLN+++ A
Sbjct: 70  SWTCSCGLWKATTHHLPSALCHGLNYVNCA 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,219
Number of Sequences: 37544
Number of extensions: 312581
Number of successful extensions: 886
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)