Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L07
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    30   0.19 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   5.4  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   5.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   7.2  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    24   9.5  

>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 29.9 bits (64), Expect = 0.19
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 359 IQRIFFLSIMFLV*YNYFYFIILNINWNFQW-FIF 258
           I R+ F S++F++  + FYF+  ++    QW F+F
Sbjct: 409 ILRVLFFSLLFIIGIHIFYFLFFHVATIQQWPFLF 443


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 92  VIHTSFTLNLFYFLLVTRKYQYFLVSSPR 6
           ++H  F  +LF F     K+Q+FLV  P+
Sbjct: 169 LVHLLFFKSLFKFSTNLVKFQWFLVPEPQ 197


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 222 LNIRTCRNFFR--RVVNFIILILYYSVIL 142
           L+ RT RN  +  +VVNF ILI  ++V L
Sbjct: 67  LSARTFRNLTKCAKVVNFCILISLFNVFL 95


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 237 ENNV*LNIRTCRNFFRRVVNFIIL 166
           + N+ +N+RT R+FFR  +  I+L
Sbjct: 308 KENLAVNVRTARDFFREDICGILL 331


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 128 KNCIMLNLYINLVIHTSFTLNLFYF 54
           KN  ++++YI +VI  S  ++LFYF
Sbjct: 102 KNTSLISVYIGIVI--SLLVSLFYF 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,311
Number of Sequences: 5004
Number of extensions: 30525
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)