Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L07
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical ...    30   0.91 
Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine re...    27   4.8  
Z81527-2|CAB04270.1|  361|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical
           protein Y37H2C.1 protein.
          Length = 718

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
 Frame = -2

Query: 350 IFFLSIMFLV*YNYFYFIILNINWNFQWFIFSYNCSNLRTMFS*TYVPVGISLDEXXXXX 171
           I+F +   LV Y +FY II  I + +  F FSY    +R +F   ++ +  +L+      
Sbjct: 599 IYFSAKGQLVIYLFFY-IIQKIRFEWSSFTFSYT---IRCIFLIVFLVLFQTLNRYFANF 654

Query: 170 XX---XXXIPSY*RYFNKNCIMLNLYINLVIHTSFTLNLFYFLLVTRKYQYFLVSSPR 6
                    P+  R  N  CI+  +  N V H +  +   +F+L+       + S P+
Sbjct: 655 ASPFNFYESPALSRELNSECIIPGIDWNNVRHYNAVITCSFFILLLDYIDINIESVPK 712


>Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical
           protein T19C4.2 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 128 KNCIMLNLYINLVIHTSFTLNLFYFLLVTRKYQYFLVSS 12
           + C + ++Y  L++  +FTLN+ Y L+    Y  + ++S
Sbjct: 66  QTCALSSIY--LMLENNFTLNIMYSLMYNMSYVQYAITS 102


>AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein140 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -2

Query: 92  VIHTSFTLNLFYFLLVTRK 36
           V   SF++NLF+F+++TRK
Sbjct: 48  VAAVSFSINLFHFIILTRK 66


>Z81527-2|CAB04270.1|  361|Caenorhabditis elegans Hypothetical
           protein F35E12.2 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 107 LYINLVIHTSFTLNLFYFLLVTRKYQYFLV 18
           L+IN + +TS    ++ F+ + +KYQ+ L+
Sbjct: 113 LHINTISNTSQMFAIYEFVNIAKKYQHVLI 142


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 452 SSLISRSIHKQIIFLLYVVHLS*YKNII 369
           S  IS  I K+IIFL++ V  + YK +I
Sbjct: 504 SIFISNLISKKIIFLIFQVQFALYKTLI 531


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,797,404
Number of Sequences: 27780
Number of extensions: 158888
Number of successful extensions: 330
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)