Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L06
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 304 7e-84
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 303 9e-84
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.50
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 0.88
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.5
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 27 2.0
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.7
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 25 6.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 6.2
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 25 8.2
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 8.2
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 304 bits (746), Expect = 7e-84
Identities = 137/185 (74%), Positives = 159/185 (85%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 388
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 389 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREE 568
KP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y R+E
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180
Query: 569 FEKLR 583
+ + R
Sbjct: 181 YIEKR 185
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 303 bits (745), Expect = 9e-84
Identities = 137/185 (74%), Positives = 159/185 (85%)
Frame = +2
Query: 29 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 388
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 389 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREE 568
KP G VARV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y R+E
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDE 180
Query: 569 FEKLR 583
+ + R
Sbjct: 181 YIEKR 185
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.50
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 53 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 229
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 230 G 232
G
Sbjct: 94 G 94
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 0.88
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +2
Query: 299 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 466
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 467 QVIEALRRAKFKFPGRQKIYVSK 535
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 110 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 229
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 27.1 bits (57), Expect = 2.0
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 423 PIRTRATVPWGFPNAPRIPVWSLSAPA---HDNILLMRMTWKGCSLIRMWN*SLPQFFTR 253
P+RT + WG+ N IP+W + PA + I +T +R + +L +FFTR
Sbjct: 81 PLRTLSRW-WGYVNRIEIPLW-MRVPAFGLYSKIFGCNLTEADPDDVRQYK-NLAEFFTR 137
Query: 252 YL 247
L
Sbjct: 138 KL 139
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 224 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 105
P P +S+ R Q+LSA + S+P S PS GSL +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 131 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 274
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 402 VPWGFPNAPRIPV 364
+ W FPNAP IPV
Sbjct: 46 IKWIFPNAPSIPV 58
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 272 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 376
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 439 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA 341
RH G+S +++ C L + +T LE + S A
Sbjct: 94 RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 169 WEVIHCRSLFAQVENTDLWVRHTPT 95
+ ++H +LFA EN D ++ PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,574,991
Number of Sequences: 5004
Number of extensions: 55045
Number of successful extensions: 169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -