Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L05
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    28   1.0  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   4.1  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   4.1  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    25   5.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   7.2  
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    25   7.2  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   7.2  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   9.5  

>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 250  LDIPADLIMTIASLEDLKISKFLISFNAFERWS 152
            +D  + L + + SL DL ISKF ++    E WS
Sbjct: 1249 VDFLSSLQLAVESLTDLLISKFKLNHLVLELWS 1281


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +3

Query: 126  ESLNKLHSEDQR---SKALNDIKNLLIFKSSRDAIVIIRSAGISKIVQC 263
            E+L KL S  Q+   SKALN+IK L+I     D I I + A   + +QC
Sbjct: 935  ENLCKLLSPSQKAQSSKALNEIKYLII-----DEISIYKIAKERQDIQC 978


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +3

Query: 105 HDTEQYRESLNKLHSEDQRSKALNDIKNLLIFKSSRDAIVII 230
           +D  ++ ES+NKL   ++   +  + KNL+I  S R+ + ++
Sbjct: 594 NDLRRFHESINKLQDREKELTSNLEKKNLVI-SSLRETVAML 634


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 117 QYRESLNKLHSEDQRSKALNDIKN 188
           QYRES  KL +E Q  K  ND+K+
Sbjct: 123 QYRESHLKLLNELQNVKDTNDLKD 146


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
 Frame = -2

Query: 271 RFKHCTILDIPADLIMTIASLE---------DLKISKFLISFNAFE 161
           R     +L I +D++  +ASL          DLK+   L+SFN F+
Sbjct: 132 RLSEHEVLKIISDIVQGVASLHYLRPPLIHRDLKVENVLLSFNTFK 177


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 273 KTEANIDLTCEVLKICFDKFEPGDVIKNYTGHMMYLLRHDKDCVRRLAI 419
           K +  ID    ++K+CFD+ +    I ++ G +  ++  DKD +R + I
Sbjct: 149 KPDLTIDEAVRIMKLCFDELKKRMPI-DFKGFICKVV--DKDGIREINI 194


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 306 VLKICFDKFEPGDVIKNYTGHMMYLLRHDKDCVRRLAIDQV 428
           +LK+C  +FE    I     H++Y +  D D   R+ ++Q+
Sbjct: 217 LLKVCQGQFEMPSNISPQAQHLLYRML-DVDSSTRITMEQI 256


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 23/98 (23%), Positives = 46/98 (46%)
 Frame = -2

Query: 334 SNLSKHIFKTSQVKSMLASVFRFKHCTILDIPADLIMTIASLEDLKISKFLISFNAFERW 155
           +NL +   ++ + K  L   +  +HC+  +IPA  +  + SL    +++     +   + 
Sbjct: 173 ANLPEAFSRSIEFKRRLEK-WLLEHCSETEIPAQQLQALPSLSKNTVNE----SSLVRKL 227

Query: 154 SSECSLLRDSRYCSVSCVDIFITNSKFLSAKYCNKIRS 41
           + E S  R+ R  + +    F TN    +AKY N++ S
Sbjct: 228 NLEKSTSRELRIPTQTLEPKFTTN----TAKYANELVS 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,353
Number of Sequences: 5004
Number of extensions: 39506
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)