Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L05
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0083 + 16374830-16374922,16375917-16375974,16377893-163780...    32   0.34 
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658...    29   3.2  
02_05_0350 - 28179063-28179584,28179674-28180041,28180179-281802...    27   7.3  
04_01_0351 - 4616820-4617236                                           27   9.7  
01_06_1384 + 36888265-36889577,36889683-36889908                       27   9.7  

>06_03_0083 +
           16374830-16374922,16375917-16375974,16377893-16378089,
           16378176-16378292,16378437-16378497,16378603-16378691,
           16378808-16378882,16378992-16379080,16379203-16379252,
           16379539-16379699,16380004-16380132,16380548-16380928
          Length = 499

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 397 SLSCLSKYII*PV*FLITSPGSNLSKHIFKTSQVKSML 284
           SL  L  YI  P+  L+T  GSN+ K IF+   +K+++
Sbjct: 355 SLQVLCSYITFPLYALVTQMGSNMKKTIFEEQTMKALM 392


>02_04_0454 +
           23064081-23064139,23064297-23064366,23064553-23065815,
           23065946-23066515
          Length = 653

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 199 KISKFLISFNAFERWSSECSLLRDSRYCSVSCVDIFITN 83
           K+  FL S     RW    ++L  +R+C+  C DI +T+
Sbjct: 125 KLDAFLASC-LLRRWKDALAVLNSTRHCAPLCEDIGLTS 162


>02_05_0350 -
           28179063-28179584,28179674-28180041,28180179-28180270,
           28180366-28180412
          Length = 342

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 201 KSSRDAIVIIRSAGISKIVQCLNLKTEANIDLTCEVLKICFDKFEPGDV 347
           +SS  A V  R +G  +      L+    + L C  L +C D F  GDV
Sbjct: 272 ESSSSAYVDPRRSGSDRACLTCRLRPATVVLLPCRHLSLCGDCFAAGDV 320


>04_01_0351 - 4616820-4617236
          Length = 138

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 163 ERWSSECSLLRDSRYCSVSCVD 98
           ERW   C L RD + C  +C++
Sbjct: 50  ERWDVGCDLKRDGQRCRSTCLE 71


>01_06_1384 + 36888265-36889577,36889683-36889908
          Length = 512

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -2

Query: 532 ATPTSLSPTSCATATYTSMYSGI--GNRLGSFVMAL*TWSIASLRTQS 395
           ++ +SLSP+S A AT TS   G+  G RL     +L +WS+   R ++
Sbjct: 18  SSSSSLSPSSSAAAT-TSRRHGVLGGVRLSRGQSSLASWSVGMTRRRA 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,732,315
Number of Sequences: 37544
Number of extensions: 210652
Number of successful extensions: 524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)