Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L05
(542 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006632-7|AAK85470.1| 225|Caenorhabditis elegans Hypothetical ... 32 0.31
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL110477-3|CAB54326.1| 314|Caenorhabditis elegans Hypothetical ... 29 2.9
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr... 28 3.8
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr... 28 3.8
U28736-2|AAA68307.1| 620|Caenorhabditis elegans Hypothetical pr... 28 5.0
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 6.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 6.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 6.6
AC006677-4|AAF39949.1| 327|Caenorhabditis elegans Serpentine re... 27 8.7
>AC006632-7|AAK85470.1| 225|Caenorhabditis elegans Hypothetical
protein F28A10.4 protein.
Length = 225
Score = 31.9 bits (69), Expect = 0.31
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = -2
Query: 352 LITSPGSNLSKHIFKTSQVKSMLASVFRFKHCTILDIPADLIMTIASLEDLKISKFLISF 173
LIT L + + +++ + +FR +HC + D P D+ ++ I I++
Sbjct: 146 LITLTAKRLKSFMDRNPEIEKIADGLFR-RHCQV-DCPEDMKYKTSTETWRTIHDVHINW 203
Query: 172 NAFERWSSECSLLRDSRYCSVSCVDI 95
+E +L RD C +SC+D+
Sbjct: 204 KMYEE-----ALARDDVECDISCIDL 224
>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
protein F54F12.1 protein.
Length = 1217
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 93 KMSTHDTEQYRESLNKLHSEDQ---RSKALNDIKNLLIFKSSRDAIVIIRSAGISKIVQC 263
K + + + E +N+L+ + + R + LN++KNL + K D +V + KIV
Sbjct: 320 KYNISEISEVVELMNQLNLKVRQLSRFEYLNELKNLTVLK---DILVNPPTTDEGKIVVI 376
Query: 264 LNLKTEANIDLTCEVL 311
N+K+E + E+L
Sbjct: 377 KNMKSEPKFEKVLEIL 392
>AL110477-3|CAB54326.1| 314|Caenorhabditis elegans Hypothetical
protein Y113G7B.4 protein.
Length = 314
Score = 28.7 bits (61), Expect = 2.9
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Frame = -2
Query: 355 FLITSPGSNLSKHIFKTSQVKSMLASVFRFKHCTILDIPADLIMTIAS-----LEDLKIS 191
F+I S N SK + + + S+ K ++D P DL+ ++ LE ++
Sbjct: 135 FVIVSSCGN-SKEFVEWLREITQSGSLLHTKRIRVIDCPGDLLGVLSHCKPGFLEAIEFY 193
Query: 190 KF----LISFNAFERWSSECSLLRDSRYCSVSCVDIFITNSKF------LSAKYCNKIRS 41
F + E+W S+ DSR C ++ F S+F LS KIR
Sbjct: 194 CFNSGKIDEITNLEQWKRAKSINIDSRRCDDIPIEHFFHFSRFTIRMGKLSVPDAIKIRD 253
Query: 40 DKVKKTTF 17
D +K F
Sbjct: 254 DLMKSAHF 261
>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
protein C28A5.2 protein.
Length = 1218
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 81 EFVIKMSTHDTEQYRESLNKLHSEDQRSKALNDIKNLLIFKSSRDA 218
+F++ S +++ + + D R ALND N+LI +S D+
Sbjct: 610 DFILTESVYESSSAASTCTVIDRNDARFSALNDDSNILISESWLDS 655
>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
protein C28A5.1 protein.
Length = 1223
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 81 EFVIKMSTHDTEQYRESLNKLHSEDQRSKALNDIKNLLIFKSSRDA 218
+F++ S +++ + + D R ALND N+LI +S D+
Sbjct: 610 DFILTESVYESSSAASTCTVIDRNDARFSALNDDSNILISESWLDS 655
>U28736-2|AAA68307.1| 620|Caenorhabditis elegans Hypothetical
protein F26A10.2 protein.
Length = 620
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 310 KTSQVKSMLASVFRFKHCTILDIPADLIMTIASL 209
KTS+VK + A + C D ADL+ T+A+L
Sbjct: 584 KTSEVKELAAVLMTIYLCHAADQVADLLSTMAAL 617
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +3
Query: 213 DAIVIIRSAGISK---IVQCLNLKTEANIDLTCEVLKICFDKFEPGDVIK 353
D I ++R I K +VQC + + + +C + K ++ E GD+ K
Sbjct: 4090 DGIALLRMKNIKKDKSVVQCEAINCKGKVTTSCVLTKCGVEESEAGDLQK 4139
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +3
Query: 213 DAIVIIRSAGISK---IVQCLNLKTEANIDLTCEVLKICFDKFEPGDVIK 353
D I ++R I K +VQC + + + +C + K ++ E GD+ K
Sbjct: 4090 DGIALLRMKNIKKDKSVVQCEAINCKGKVTTSCVLTKCGVEESEAGDLQK 4139
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +3
Query: 213 DAIVIIRSAGISK---IVQCLNLKTEANIDLTCEVLKICFDKFEPGDVIK 353
D I ++R I K +VQC + + + +C + K ++ E GD+ K
Sbjct: 4090 DGIALLRMKNIKKDKSVVQCEAINCKGKVTTSCVLTKCGVEESEAGDLQK 4139
>AC006677-4|AAF39949.1| 327|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 58 protein.
Length = 327
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 539 FVSHTYIIVTHKLCDCYIHINVFWYW*QIRI-FCYGFV 429
FVS ++ H++ Y+H+N YW I I FC G +
Sbjct: 120 FVS-AVVLSVHRITSVYLHMNNDKYWNLIFIFFCLGSI 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,106,921
Number of Sequences: 27780
Number of extensions: 217877
Number of successful extensions: 601
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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