Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L04
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   115   2e-27
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   114   3e-27
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    26   1.5  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   1.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   2.6  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   3.4  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   4.5  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    25   4.5  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    24   7.9  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    24   7.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    24   7.9  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  115 bits (277), Expect = 2e-27
 Identities = 51/94 (54%), Positives = 66/94 (70%)
 Frame = +2

Query: 71  KSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQ 250
           K  KARG+ LR HFKN+ E A  I  + L++A  +L NV E K+ +PFRRFNGGVGR AQ
Sbjct: 13  KCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72

Query: 251 AKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
            K+FG T  RWP KS +F   L++NA++NA+ KG
Sbjct: 73  GKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKG 106


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  114 bits (275), Expect = 3e-27
 Identities = 51/94 (54%), Positives = 65/94 (69%)
 Frame = +2

Query: 71  KSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQ 250
           K  KARG+ LR HFKN+ E A  I  + L++A  +L NV E K+ +PFRRFNGGVGR AQ
Sbjct: 13  KCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72

Query: 251 AKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
            K+FG T  RWP KS  F   L++NA++NA+ KG
Sbjct: 73  GKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKG 106


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 301 FCRFLGPTTVCGTKLFSLCTTANSTVKTTEGNAFLLFCHIL 179
           F   L P TVC   L S+ + A  +++ T    F+ F H L
Sbjct: 192 FLSTLTPGTVCRLVLPSILSPAFYSIRATHPQHFIRFIHTL 232


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 95  NLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEK-KECI 208
           NLRV  K T ++ +++   P  +  RYLK + E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 67  RLCGSRDNDPFLFLPGETSCP 5
           RLC +R N    F+PGE + P
Sbjct: 326 RLCANRFNKSNFFIPGEVTGP 346


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 136 GYKKTASSPCCPLPKECDRKEGMHSL 213
           GY   + S   P+PK+  RKE  +SL
Sbjct: 262 GYSDHSVSVAAPIPKKESRKESSNSL 287


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 92  SNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKK 199
           +N ++  K+  ETA A+RK+  +  +R L+ + ++K
Sbjct: 73  TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 201 NAFPSVVLTVELAVVHKLNSLVPHTVVGPRNLQNSCSNS*GMLTQMLTTK 350
           NAF S V+  EL +  +   L+P +  G R      S S G L   L  K
Sbjct: 303 NAFCSFVIVYELPLFFETTLLMPSSEAGVRIFPYVISTSVGSLCSGLYMK 352


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 212 FRRFNGGVGRCAQAKQFGTTHGRWPKKSAEFLLQLMR 322
           F  +   +  CAQ  Q  +TH +   +SA+ L+ L R
Sbjct: 115 FENYRQVLNDCAQVLQRDSTHAKAYYRSAKALVALKR 151


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 104 VHFKNTYETAMAIRKLPLRRAVRYLKNVTEK 196
           VH K+  ETA  I+  P  R    LKN ++K
Sbjct: 327 VHCKSNQETAKHIQNNPRIRINSILKNNSQK 357


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 189 QKRRNAFPSVVLTVELAVVHKLNSLVPHTVVGPRNLQNS 305
           Q+ R    S++  +E    H +  ++P+ +  P NL  S
Sbjct: 640 QRHRRQLSSLMHQLEATQPHFVRCIIPNNLKQPHNLDKS 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,325
Number of Sequences: 5004
Number of extensions: 28672
Number of successful extensions: 73
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)