Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L04
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 125 9e-30
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 110 3e-25
04_04_1362 + 32897581-32897925,32897979-32897984 29 1.0
03_01_0427 + 3296717-3296861,3296966-3297210 28 2.4
12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077 27 3.1
11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989 27 3.1
08_02_0628 + 19459198-19459674,19459751-19459894,19460191-194604... 27 4.1
01_01_0714 - 5539961-5540401 27 5.5
05_06_0286 + 26932395-26933155,26934287-26934407,26934496-269347... 26 7.2
03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759 26 7.2
01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995... 26 9.6
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 125 bits (302), Expect = 9e-30
Identities = 61/97 (62%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Frame = +2
Query: 65 PAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRC 244
P KS KA G +LRVHFKNT ETA AIRKLPL +A RYL++V K+ IPFRR+ GGVGR
Sbjct: 11 PTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRT 70
Query: 245 AQAK-QFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
AQAK + GRWP KSA F+L L++NA+SNA+ KG
Sbjct: 71 AQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKG 107
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 110 bits (265), Expect = 3e-25
Identities = 60/109 (55%), Positives = 72/109 (66%), Gaps = 13/109 (11%)
Frame = +2
Query: 65 PAKSCKARGSNLRVHFK------------NTYETAMAIRKLPLRRAVRYLKNVTEKKECI 208
P KS KA G +LRVHFK NT ETA A+RKLPL +A RYL++V K+ I
Sbjct: 11 PTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAHKQAI 70
Query: 209 PFRRFNGGVGRCAQAK-QFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
PFRR+ GGVGR AQ K + GRWP KSA F+L L++NA+SNAD KG
Sbjct: 71 PFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKG 119
>04_04_1362 + 32897581-32897925,32897979-32897984
Length = 116
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 321 LMSWSRNSADFLGQRPCVVPNCLACAQRPTPPLKRRKGMH 202
L +W R SA + RP + ACA+ P +R +G +
Sbjct: 14 LRAWIRRSATAVALRPLLTGVAAACAEAIASPARRGRGRY 53
>03_01_0427 + 3296717-3296861,3296966-3297210
Length = 129
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 276 PCVVPNCLACAQRPTPPLKRRKGM 205
PCV+PNC A A R P L + M
Sbjct: 92 PCVIPNCKASAARLCPLLLSQSHM 115
>12_01_0254 + 1885412-1885683,1886123-1886389,1886501-1887077
Length = 371
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 88 WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 177
W++ SCS+ E L +C G K T C P
Sbjct: 81 WVEHSCSVPELLDSCRGSKDTKREQECGRP 110
>11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989
Length = 371
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 88 WLKPSCSLQEHL*NCHGYKKTASSPCCPLP 177
W++ SCS+ E L +C G K T C P
Sbjct: 81 WVEHSCSVPELLDSCRGSKDTKREQECGRP 110
>08_02_0628 +
19459198-19459674,19459751-19459894,19460191-19460431,
19460616-19461116,19461226-19461635
Length = 590
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 163 CCPLPKECDRKEGMHSLPSF*RWSWPLCT 249
CCP P + G HS S +SWP T
Sbjct: 32 CCPSPLQPIASGGQHSESSAAYFSWPTST 60
>01_01_0714 - 5539961-5540401
Length = 146
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 131 AMAIRKLPL-RRAVRYLKNVTEKKECIPFRRFNGGVGRCAQ 250
A+ K+P +R Y +N +K P+RR + RCA+
Sbjct: 103 ALDANKVPCNKRGQSYYQNCASQKAANPYRRGCSAITRCAR 143
>05_06_0286 +
26932395-26933155,26934287-26934407,26934496-26934772,
26934934-26935094
Length = 439
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +3
Query: 156 FAVLSVT*RM*QKRRNAFPSVVLTVELAVVHKLNSLVPHTVVGPRNLQNSC 308
FA L + + KRR F V L+++ +V + + P VV NLQ SC
Sbjct: 337 FAELKLNPDLLAKRRERF--VELSLDPNIVGCADDIEPMCVVSIHNLQGSC 385
>03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759
Length = 417
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 188 TEKKECIPFRRFNGGVGRCAQAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYK 349
T+ E P RR +GG G A+ ++ ++H ++ A+F +++ S+A K
Sbjct: 324 TDALERQPSRRKSGGGGGGAKMQRSSSSHAAAAQRGAQFPWPVIKLDTSSASLK 377
>01_06_0684 +
31196825-31197252,31199189-31199291,31199402-31199512,
31199614-31199697,31199915-31199986,31200073-31200129,
31200427-31200546,31201301-31201324,31201953-31202063,
31202165-31202202,31202287-31202443,31202700-31202801,
31202878-31202934,31203113-31203259,31203429-31203499,
31203582-31203669,31203810-31203866,31203996-31204193
Length = 674
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 239 RCAQAKQFGTTHGRWPKKSAEFLLQLMRN 325
R Q Q G T G +++ EFL+QLMRN
Sbjct: 567 RSLQMAQEGRT-GESVRQTVEFLIQLMRN 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,548,824
Number of Sequences: 37544
Number of extensions: 214139
Number of successful extensions: 511
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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