Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L04
(352 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X53777-1|CAA37793.1| 184|Homo sapiens protein ( Human L23 mRNA ... 158 4e-39
BC106031-1|AAI06032.1| 184|Homo sapiens ribosomal protein L17 p... 158 4e-39
BC066324-1|AAH66324.1| 184|Homo sapiens ribosomal protein L17 p... 158 4e-39
BC066323-1|AAH66323.1| 184|Homo sapiens ribosomal protein L17 p... 158 4e-39
BC017831-1|AAH17831.1| 184|Homo sapiens ribosomal protein L17 p... 158 4e-39
BC000502-1|AAH00502.1| 184|Homo sapiens ribosomal protein L17 p... 158 4e-39
AB061824-1|BAB79462.1| 184|Homo sapiens ribosomal protein L17 p... 158 4e-39
EF560746-1|ABQ59056.1| 979|Homo sapiens KIAA1394 protein protein. 30 1.8
BC036557-1|AAH36557.1| 385|Homo sapiens KIAA1394 protein protein. 30 1.8
AB037815-1|BAA92632.1| 1003|Homo sapiens KIAA1394 protein protein. 30 1.8
>X53777-1|CAA37793.1| 184|Homo sapiens protein ( Human L23 mRNA for
putative ribosomal protein. ).
Length = 184
Score = 158 bits (384), Expect = 4e-39
Identities = 68/96 (70%), Positives = 85/96 (88%)
Frame = +2
Query: 65 PAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRC 244
P KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PFRR+NGGVGRC
Sbjct: 11 PTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRC 70
Query: 245 AQAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
AQAKQ+G T GRWPKKSAEFLL +++NA+SNA+ KG
Sbjct: 71 AQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKG 106
>BC106031-1|AAI06032.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 158 bits (384), Expect = 4e-39
Identities = 68/96 (70%), Positives = 85/96 (88%)
Frame = +2
Query: 65 PAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRC 244
P KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PFRR+NGGVGRC
Sbjct: 11 PTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRC 70
Query: 245 AQAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
AQAKQ+G T GRWPKKSAEFLL +++NA+SNA+ KG
Sbjct: 71 AQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKG 106
>BC066324-1|AAH66324.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 158 bits (384), Expect = 4e-39
Identities = 68/96 (70%), Positives = 85/96 (88%)
Frame = +2
Query: 65 PAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRC 244
P KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PFRR+NGGVGRC
Sbjct: 11 PTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRC 70
Query: 245 AQAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
AQAKQ+G T GRWPKKSAEFLL +++NA+SNA+ KG
Sbjct: 71 AQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKG 106
>BC066323-1|AAH66323.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 158 bits (384), Expect = 4e-39
Identities = 68/96 (70%), Positives = 85/96 (88%)
Frame = +2
Query: 65 PAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRC 244
P KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PFRR+NGGVGRC
Sbjct: 11 PTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRC 70
Query: 245 AQAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
AQAKQ+G T GRWPKKSAEFLL +++NA+SNA+ KG
Sbjct: 71 AQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKG 106
>BC017831-1|AAH17831.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 158 bits (384), Expect = 4e-39
Identities = 68/96 (70%), Positives = 85/96 (88%)
Frame = +2
Query: 65 PAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRC 244
P KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PFRR+NGGVGRC
Sbjct: 11 PTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRC 70
Query: 245 AQAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
AQAKQ+G T GRWPKKSAEFLL +++NA+SNA+ KG
Sbjct: 71 AQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKG 106
>BC000502-1|AAH00502.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 158 bits (384), Expect = 4e-39
Identities = 68/96 (70%), Positives = 85/96 (88%)
Frame = +2
Query: 65 PAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRC 244
P KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PFRR+NGGVGRC
Sbjct: 11 PTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRC 70
Query: 245 AQAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
AQAKQ+G T GRWPKKSAEFLL +++NA+SNA+ KG
Sbjct: 71 AQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKG 106
>AB061824-1|BAB79462.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 158 bits (384), Expect = 4e-39
Identities = 68/96 (70%), Positives = 85/96 (88%)
Frame = +2
Query: 65 PAKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRC 244
P KSCK+RGSNLRVHFKNT ETA AI+ + +R+A +YLK+VT +K+C+PFRR+NGGVGRC
Sbjct: 11 PTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRC 70
Query: 245 AQAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
AQAKQ+G T GRWPKKSAEFLL +++NA+SNA+ KG
Sbjct: 71 AQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKG 106
>EF560746-1|ABQ59056.1| 979|Homo sapiens KIAA1394 protein protein.
Length = 979
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 112 QEHL*NCHGYKKTASS----PCCPLPKECDRKEGMHSLP 216
Q HL + HG A S PCCPL E D + +H +P
Sbjct: 660 QLHLLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVP 698
>BC036557-1|AAH36557.1| 385|Homo sapiens KIAA1394 protein protein.
Length = 385
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 112 QEHL*NCHGYKKTASS----PCCPLPKECDRKEGMHSLP 216
Q HL + HG A S PCCPL E D + +H +P
Sbjct: 66 QLHLLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVP 104
>AB037815-1|BAA92632.1| 1003|Homo sapiens KIAA1394 protein protein.
Length = 1003
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +1
Query: 112 QEHL*NCHGYKKTASS----PCCPLPKECDRKEGMHSLP 216
Q HL + HG A S PCCPL E D + +H +P
Sbjct: 684 QLHLLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVP 722
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,618,419
Number of Sequences: 237096
Number of extensions: 1102787
Number of successful extensions: 2414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2414
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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