Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L04
         (352 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060845-1|AAL28393.1|  186|Drosophila melanogaster GM02242p pro...   170   5e-43
AE014298-945|AAN09183.1|  186|Drosophila melanogaster CG3203-PD,...   170   5e-43
AE014298-944|AAF46194.1|  186|Drosophila melanogaster CG3203-PC,...   170   5e-43
AE014298-943|AAN09182.1|  186|Drosophila melanogaster CG3203-PB,...   170   5e-43
AE014298-942|AAF46195.1|  186|Drosophila melanogaster CG3203-PA,...   170   5e-43
AF521598-1|AAN62854.1|  400|Drosophila melanogaster MSP-300/nesp...    28   2.9  
AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-P...    28   2.9  
BT023914-1|ABA81848.1|  358|Drosophila melanogaster AT16804p pro...    27   8.9  
BT001338-1|AAN71093.1|  501|Drosophila melanogaster AT21229p pro...    27   8.9  
AE014297-4739|AAN14270.1|  501|Drosophila melanogaster CG31003-P...    27   8.9  
AE014296-1763|AAF50195.1|  358|Drosophila melanogaster CG10809-P...    27   8.9  

>AY060845-1|AAL28393.1|  186|Drosophila melanogaster GM02242p
           protein.
          Length = 186

 Score =  170 bits (413), Expect = 5e-43
 Identities = 76/95 (80%), Positives = 87/95 (91%)
 Frame = +2

Query: 68  AKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCA 247
           AKSCKARG NLRVHFKNT+ETA AI+++PLRRA RYLK V ++KEC+PFRRFNGGVGRCA
Sbjct: 12  AKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCA 71

Query: 248 QAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
           QAKQ+ TT GRWPKKSAEFLLQL+RNA++NAD KG
Sbjct: 72  QAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKG 106


>AE014298-945|AAN09183.1|  186|Drosophila melanogaster CG3203-PD,
           isoform D protein.
          Length = 186

 Score =  170 bits (413), Expect = 5e-43
 Identities = 76/95 (80%), Positives = 87/95 (91%)
 Frame = +2

Query: 68  AKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCA 247
           AKSCKARG NLRVHFKNT+ETA AI+++PLRRA RYLK V ++KEC+PFRRFNGGVGRCA
Sbjct: 12  AKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCA 71

Query: 248 QAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
           QAKQ+ TT GRWPKKSAEFLLQL+RNA++NAD KG
Sbjct: 72  QAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKG 106


>AE014298-944|AAF46194.1|  186|Drosophila melanogaster CG3203-PC,
           isoform C protein.
          Length = 186

 Score =  170 bits (413), Expect = 5e-43
 Identities = 76/95 (80%), Positives = 87/95 (91%)
 Frame = +2

Query: 68  AKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCA 247
           AKSCKARG NLRVHFKNT+ETA AI+++PLRRA RYLK V ++KEC+PFRRFNGGVGRCA
Sbjct: 12  AKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCA 71

Query: 248 QAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
           QAKQ+ TT GRWPKKSAEFLLQL+RNA++NAD KG
Sbjct: 72  QAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKG 106


>AE014298-943|AAN09182.1|  186|Drosophila melanogaster CG3203-PB,
           isoform B protein.
          Length = 186

 Score =  170 bits (413), Expect = 5e-43
 Identities = 76/95 (80%), Positives = 87/95 (91%)
 Frame = +2

Query: 68  AKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCA 247
           AKSCKARG NLRVHFKNT+ETA AI+++PLRRA RYLK V ++KEC+PFRRFNGGVGRCA
Sbjct: 12  AKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCA 71

Query: 248 QAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
           QAKQ+ TT GRWPKKSAEFLLQL+RNA++NAD KG
Sbjct: 72  QAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKG 106


>AE014298-942|AAF46195.1|  186|Drosophila melanogaster CG3203-PA,
           isoform A protein.
          Length = 186

 Score =  170 bits (413), Expect = 5e-43
 Identities = 76/95 (80%), Positives = 87/95 (91%)
 Frame = +2

Query: 68  AKSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCA 247
           AKSCKARG NLRVHFKNT+ETA AI+++PLRRA RYLK V ++KEC+PFRRFNGGVGRCA
Sbjct: 12  AKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCA 71

Query: 248 QAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
           QAKQ+ TT GRWPKKSAEFLLQL+RNA++NAD KG
Sbjct: 72  QAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKG 106


>AF521598-1|AAN62854.1|  400|Drosophila melanogaster MSP-300/nesprin
           splice variant protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +2

Query: 92  SNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQA 253
           SNL VH ++  E     +KLP   A   L N T  +  +  RR   G+   A A
Sbjct: 288 SNLEVHERDAIELKNQAKKLPTDPATERLLNDTVDRIDLLLRRTQQGITMIANA 341


>AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-PD,
            isoform D protein.
          Length = 11707

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +2

Query: 92   SNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQA 253
            SNL VH ++  E     +KLP   A   L N T  +  +  RR   G+   A A
Sbjct: 7749 SNLEVHERDAIELKNQAKKLPTDPATERLLNDTVDRIDLLLRRTQQGITMIANA 7802


>BT023914-1|ABA81848.1|  358|Drosophila melanogaster AT16804p
           protein.
          Length = 358

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 269 THGRWPKKSAEFLLQLMRNADSNADYK 349
           THG WP  +    L +  N  +NA ++
Sbjct: 69  THGEWPHMNINLNLNMSSNPSTNASFQ 95


>BT001338-1|AAN71093.1|  501|Drosophila melanogaster AT21229p
           protein.
          Length = 501

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 209 ECIPSFLSHSLGNGQH 162
           E  P FL H LGNG H
Sbjct: 409 ESPPGFLQHDLGNGDH 424


>AE014297-4739|AAN14270.1|  501|Drosophila melanogaster CG31003-PA
           protein.
          Length = 501

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 209 ECIPSFLSHSLGNGQH 162
           E  P FL H LGNG H
Sbjct: 409 ESPPGFLQHDLGNGDH 424


>AE014296-1763|AAF50195.1|  358|Drosophila melanogaster CG10809-PA
           protein.
          Length = 358

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 269 THGRWPKKSAEFLLQLMRNADSNADYK 349
           THG WP  +    L +  N  +NA ++
Sbjct: 69  THGEWPHMNINLNLNMSSNPSTNASFQ 95


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,209,738
Number of Sequences: 53049
Number of extensions: 353004
Number of successful extensions: 949
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 838265760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)