Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L04
         (352 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   148   1e-36
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    81   2e-18
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    29   0.71 
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    28   2.2  
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    28   2.2  
AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical ...    27   3.8  
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    27   5.0  
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st...    27   5.0  
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st...    27   5.0  
Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z81483-6|CAE53731.1|  277|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z48638-9|CAA88569.1|  202|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  148 bits (358), Expect = 1e-36
 Identities = 65/94 (69%), Positives = 80/94 (85%)
 Frame = +2

Query: 71  KSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQ 250
           KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF+GG+GR AQ
Sbjct: 15  KSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQ 74

Query: 251 AKQFGTTHGRWPKKSAEFLLQLMRNADSNADYKG 352
            KQ+ TT GRWP KSA+FLL L++NA+SNA+YKG
Sbjct: 75  TKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKG 108


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 81.0 bits (191), Expect(2) = 2e-18
 Identities = 36/51 (70%), Positives = 43/51 (84%)
 Frame = +2

Query: 71  KSCKARGSNLRVHFKNTYETAMAIRKLPLRRAVRYLKNVTEKKECIPFRRF 223
           KSCKARGS+LRVHFKNT+E AMA+R +PLRRA  +L +V E KE +PFRRF
Sbjct: 15  KSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65



 Score = 27.5 bits (58), Expect(2) = 2e-18
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +2

Query: 308 LQLMRNADSNADYKG 352
           L L++NA+SNA+YKG
Sbjct: 66  LDLLKNAESNAEYKG 80


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 311 GAGILQISWANDRVWYQTV*LVH 243
           GAG+ +I W N++ W +++ L H
Sbjct: 357 GAGVYKIKWGNEQAWIRSLTLYH 379


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
           protein C23F12.1a protein.
          Length = 2329

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 170 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYK 349
           RY  +  EKK+  P   +   V + + + ++ T + R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 350 G 352
           G
Sbjct: 554 G 554


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
           protein C23F12.1b protein.
          Length = 2747

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 170 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTTHGRWPKKSAEFLLQLMRNADSNADYK 349
           RY  +  EKK+  P   +   V + + + ++ T + R+ +KS +  L        +A YK
Sbjct: 494 RYFGDTLEKKDRPPSAGYYSSVQQRSTSPEYSTVYERYDRKSEKPDLPPRVEGHVSASYK 553

Query: 350 G 352
           G
Sbjct: 554 G 554


>AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical
           protein F28H6.3 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 57  PHNLLSHVKRVAQTFVFTSRTPMKL 131
           P +LLS +K ++Q  V+T  TP++L
Sbjct: 263 PQHLLSPLKTISQNCVYTCPTPIQL 287


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1613

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 3   NGHEVSPGRNKNGSLSREPHNLLSHVKRV---AQTFVFTSR 116
           NG EV     ++  +  E H++ SH+K+V    ++ +++SR
Sbjct: 264 NGQEVMKTETRSKLVLEENHSIKSHIKKVNGEKESIIYSSR 304


>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           b protein.
          Length = 1558

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 3   NGHEVSPGRNKNGSLSREPHNLLSHVKRV---AQTFVFTSR 116
           NG EV     ++  +  E H++ SH+K+V    ++ +++SR
Sbjct: 264 NGQEVMKTETRSKLVLEENHSIKSHIKKVNGEKESIIYSSR 304


>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 2, isoform
           a protein.
          Length = 1613

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 3   NGHEVSPGRNKNGSLSREPHNLLSHVKRV---AQTFVFTSR 116
           NG EV     ++  +  E H++ SH+K+V    ++ +++SR
Sbjct: 264 NGQEVMKTETRSKLVLEENHSIKSHIKKVNGEKESIIYSSR 304


>Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 33  KNGSLSREPHNLLSHVKRVAQTFVFTSRTPMKLPWL*ENC 152
           K G LSR   +   H   V + F   +  P++LP L E C
Sbjct: 353 KRGILSRILDDCKDHAHTVTKDFERCTEGPLQLPLLKEGC 392


>U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical
           protein K08D10.10 protein.
          Length = 394

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 6   GHEVSPGRNKNGSLSREPHNLLSHVKRVAQTFVFTSRTPMKL 131
           G+  SP   KNG++  +   L + +  +   + ++  TP+KL
Sbjct: 335 GYPGSPSYEKNGTIRTDGSYLSAAIYNMTLEYSYSDNTPIKL 376


>AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 33  KNGSLSREPHNLLSHVKRVAQTFVFTSRTPMKLPWL*ENC 152
           K G LSR   +   H   V + F   +  P++LP L E C
Sbjct: 353 KRGILSRILDDCKDHAHTVTKDFERCTEGPLQLPLLKEGC 392


>Z81483-6|CAE53731.1|  277|Caenorhabditis elegans Hypothetical
           protein C43D7.9 protein.
          Length = 277

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 120 VFLK*TRRFEPRALHDLAGYAAPEITTHFYFSQ 22
           +FLK   R E ++L  L GY  PE+++   F +
Sbjct: 196 LFLKHWMRGEYKSLKSLHGYVGPEVSSDEIFKE 228


>Z48638-9|CAA88569.1|  202|Caenorhabditis elegans Hypothetical
           protein ZK892.7 protein.
          Length = 202

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 106 SLQEHL*NCHGYKKTASSPCC 168
           S+++HL + HGY    S  CC
Sbjct: 57  SIKKHLQHAHGYVDVQSCSCC 77


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 64  TC*VM*SAWLKPSCSLQEHL*NCHGYKKTASSPCCPLPKECDRKEGMHSLPS 219
           TC +M S  +   C++  H  +   Y K  S  C    K+C   +G++ LP+
Sbjct: 813 TCNMMESEGVCSVCAINCHRGHDLAYSKKGSFFCDCGEKKCGAMQGIYHLPN 864


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,673,145
Number of Sequences: 27780
Number of extensions: 173422
Number of successful extensions: 449
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)