Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L03
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.93 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   3.7  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   3.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   3.7  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    24   6.5  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    24   6.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 126 PAGPIAPVAPTVPVGMGNHPEASHAA 203
           P  P AP+AP +P GM   P    AA
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAA 473


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 207 PWQHGLPPD 181
           PWQH LPPD
Sbjct: 831 PWQHLLPPD 839


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 154 QLCLWGWETIRRQAMLPRRR*KVEYNNLI**NTN 255
           Q+CL   +TIR   ++P+++  V+ NN+I  NT+
Sbjct: 668 QVCLAEIKTIR-PGLVPKKQFSVDQNNVISDNTD 700


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 123 LPAGPIAPVAPTVP 164
           +P  P+APVAP VP
Sbjct: 574 VPQPPVAPVAPEVP 587



 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 123 LPAGPIAPVAPTVP 164
           +P  P+APVAP VP
Sbjct: 604 VPQPPVAPVAPEVP 617


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 160 CLWGWETIRRQAMLP 204
           C W W+T +  A LP
Sbjct: 511 CFWDWKTCKLMAKLP 525


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 201 QHGLPPDGFPS 169
           +HG+ PDGFP+
Sbjct: 27  EHGIGPDGFPT 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 934,027
Number of Sequences: 5004
Number of extensions: 14563
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)