Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L03
(324 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0746 + 5580755-5582119 29 1.1
03_06_0772 - 36162537-36162745,36163131-36163171,36163316-361636... 28 1.9
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066... 27 2.6
05_01_0413 - 3253345-3253461,3253595-3253666,3253763-3253876,325... 27 2.6
03_06_0106 - 31682200-31682775 27 2.6
10_08_0035 - 14321699-14321751,14321800-14321914,14322136-143221... 27 3.4
07_03_0433 - 18169930-18170029,18171183-18171307,18172192-181723... 27 3.4
04_04_0500 - 25677767-25680850 27 4.5
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120... 26 5.9
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492... 26 5.9
03_05_0375 + 23594977-23595045,23595471-23595926 26 5.9
02_01_0468 + 3357043-3357226,3357695-3358155 26 5.9
01_06_1471 - 37588330-37588599 26 5.9
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 26 5.9
08_02_1004 - 23461798-23462024,23462340-23462415,23463479-234636... 26 7.8
06_03_0678 + 23459752-23460379,23460993-23461068,23461146-234612... 26 7.8
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 26 7.8
>06_01_0746 + 5580755-5582119
Length = 454
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +3
Query: 51 GTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMG 176
G L P +RR H +ARA L A APV V G+G
Sbjct: 40 GRGLAMPEIVRRMAH-RARARRRLLSAAEAAPVRARVRAGLG 80
>03_06_0772 -
36162537-36162745,36163131-36163171,36163316-36163600,
36163710-36163813,36163924-36164021,36165039-36165213,
36166429-36166578,36167113-36167193,36167246-36167299,
36167422-36167679
Length = 484
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -2
Query: 182 MVSHPHRHSWGHRCNWPRRQPFLRRTCLYMSRT--AQAWRRNKLGTDPFRLGLEGGCARS 9
M S PH+ + + +W R+ R + S + A+ R KL P + LEGGC+
Sbjct: 131 MYSGPHKDAVAY-ADWLRKDHRFRDLLVQTSPSLCGHAFPRLKLRYKPSLVQLEGGCSHL 189
Query: 8 P 6
P
Sbjct: 190 P 190
>06_03_0608 +
22705321-22705652,22705809-22706178,22706264-22706656,
22707183-22707204,22707257-22707928,22708019-22708494
Length = 754
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Frame = +3
Query: 69 PPCLRRATHVKARAAEERLPAGP----IAPVAPTVPVGMGNHPEASH 197
PPC R + A RLP A + P P G HP ASH
Sbjct: 40 PPCTRLLLPEQPWGAAARLPLSEPSWGTAALPPEPPWGAAAHPPASH 86
>05_01_0413 -
3253345-3253461,3253595-3253666,3253763-3253876,
3254050-3254163,3254420-3254520,3254616-3254694,
3254789-3254863,3254955-3255017,3255281-3255361,
3255449-3255574,3255898-3256022,3256722-3256839,
3257420-3257554,3258029-3258175,3259016-3259321
Length = 590
Score = 27.5 bits (58), Expect = 2.6
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 78 LRRATHVKARAAEERLPAGPIAPVAPTVPVG--MGNHPEASHAAKEALKSRI 227
+RRA V ARAA E AG V +G +G H A HA +E LK+ I
Sbjct: 58 VRRAA-VAARAAAENGVAGSGGFDYDLVIIGAGVGGHGAALHAVEEGLKTAI 108
>03_06_0106 - 31682200-31682775
Length = 191
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -2
Query: 152 GHRCNWPRRQPFLRRTCLYMSRTAQAWRRNKLGTDP--FRLGLEGGCA 15
GHR + R +P R + ++ RR++LG P + G GGCA
Sbjct: 50 GHRLHCLRPRPLPSRIVPTEAMEGRSKRRHRLGKPPPDLQAGAVGGCA 97
>10_08_0035 -
14321699-14321751,14321800-14321914,14322136-14322199,
14322221-14322238,14323433-14323524,14323580-14323601,
14324345-14324424,14324882-14325082
Length = 214
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 100 RHVRRRNGCLRGQLHLWPQLCLWGWETIRRQAMLPRRR*K 219
R RRR+ + GQL L P L+ + R ++P RR K
Sbjct: 11 RRRRRRSAAIGGQLLLPPLFWLFPLSPLSRPMVMPARRGK 50
>07_03_0433 -
18169930-18170029,18171183-18171307,18172192-18172358,
18173027-18173081,18173409-18173491,18173493-18173622,
18174482-18174691
Length = 289
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +3
Query: 48 IGTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPE 188
+GT PPC + A AA R GP A A T G PE
Sbjct: 27 VGTPAPQPPCRGFSKASAAAAASSR---GPAAAAATTTATAAGARPE 70
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 99 KARAAEERLPAGPIAPVAPTVPVGMGNHPEASHAA 203
K RA + P P +AP +G+HP+AS A
Sbjct: 12 KPRANQPPPPPPPPFRLAPAAVAALGSHPDASSYA 46
>06_01_0160 -
1205454-1205482,1205647-1205732,1205903-1205956,
1206035-1206130,1207332-1207448,1207834-1207952
Length = 166
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Frame = -2
Query: 170 PHRHSWGHRCNWPRRQPFLRRT-CL 99
PH H W R WP LRR CL
Sbjct: 74 PHLHRWYSRLRWPLLAGRLRRVGCL 98
>04_04_0318 +
24347364-24348826,24348920-24349048,24349158-24349293,
24349447-24349535,24349631-24349742,24349836-24349942,
24350033-24350129
Length = 710
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 60 LIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPEA 191
L PPP L H+ R A E+ P VA P + H E+
Sbjct: 172 LPPPPPLPPQDHIPERLAVEKSPMDVEPAVASESPEQLQEHAES 215
>03_05_0375 + 23594977-23595045,23595471-23595926
Length = 174
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -2
Query: 170 PHRHSWGHRC-NWPRRQPFLRRTCLYMSRTAQAWRRN 63
P HSW NWPR +PF R + + A W N
Sbjct: 11 PSSHSWHVGFWNWPRCRPFHRSSVVDGCGVAGPWDDN 47
>02_01_0468 + 3357043-3357226,3357695-3358155
Length = 214
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 126 PAGPIAPVAPTVPVGMGNHPEASHAAKEALKS 221
PAG P AP P G + P AA KS
Sbjct: 157 PAGQAPPGAPATPAGTNSSPANGGAAGGGAKS 188
>01_06_1471 - 37588330-37588599
Length = 89
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 60 LIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPEASHAA 203
L P PC+R H + GP AP P+ P G G+ A A+
Sbjct: 14 LPPSPCIR---HQRRGGMGAAATTGPAAPPLPSFPGGDGSARAADLAS 58
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 63 IPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPV 167
+PP R +AR+A LP+ P APV+ P+
Sbjct: 14 LPPRAGLRLPLPRARSARVSLPSSPAAPVSLQSPL 48
>08_02_1004 -
23461798-23462024,23462340-23462415,23463479-23463610,
23463927-23464004,23464919-23465320
Length = 304
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 54 TQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPEAS 194
T L+PPP A+ PAGP A VA + G+HP A+
Sbjct: 18 TSLLPPP---------PGASASLAPAGPAAAVARQIRRNDGHHPGAA 55
>06_03_0678 +
23459752-23460379,23460993-23461068,23461146-23461261,
23462425-23462939
Length = 444
Score = 25.8 bits (54), Expect = 7.8
Identities = 6/20 (30%), Positives = 13/20 (65%)
Frame = +1
Query: 142 HLWPQLCLWGWETIRRQAML 201
H + + C+WGW+ + R ++
Sbjct: 282 HQFIEYCIWGWDNLPRTVLM 301
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 99 KARAAEERLPAGPIAPVAPTVPVGMGNHPE 188
K +ERL GP P AP VP P+
Sbjct: 173 KIARRDERLAQGPREPAAPAVPAQTAAAPK 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,500,249
Number of Sequences: 37544
Number of extensions: 144810
Number of successful extensions: 663
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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