Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L03
(324 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical ... 33 0.036
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 1.3
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 27 3.1
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical pr... 27 4.1
U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase ... 26 5.4
U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase ... 26 5.4
U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical pr... 26 5.4
U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical pr... 26 5.4
U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase ... 26 5.4
U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase ... 26 5.4
U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase ... 26 5.4
AC024763-6|AAO12403.1| 603|Caenorhabditis elegans Calpain famil... 25 9.5
AC024763-5|AAO12402.1| 716|Caenorhabditis elegans Calpain famil... 25 9.5
>AL031635-4|CAA21043.2| 269|Caenorhabditis elegans Hypothetical
protein Y47D3B.6 protein.
Length = 269
Score = 33.5 bits (73), Expect = 0.036
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 48 IGTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMG 176
+G L PP ++ T AR +P P+ PVAP +PV +G
Sbjct: 181 VGVCLCPPELIQEGTVCVARTIYGVVPP-PVIPVAPVIPVALG 222
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = +3
Query: 48 IGTQLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVPVGMGNHPEASHAAKEAL 215
I T P P + A E A P +P + HP A+HAAK +
Sbjct: 1523 IVTPQAPQPTAAATSASTGPIAPEPTTAAPTTTETTPLPPSLAPHPPAAHAAKTVI 1578
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 102 ARAAEERLPAGPIAPVAPTVPV 167
A A+ + P P APVAP VP+
Sbjct: 717 AEASSDPAPPVPAAPVAPVVPI 738
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 123 LPAGPIAPVAPTVPV 167
+PA P+APV P VP+
Sbjct: 727 VPAAPVAPVVPIVPI 741
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 102 ARAAEERLPAGPIAPVAPTVPV 167
A A+ + P P APVAP VP+
Sbjct: 717 AEASSDPAPPVPAAPVAPVVPI 738
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 123 LPAGPIAPVAPTVPV 167
+PA P+APV P VP+
Sbjct: 727 VPAAPVAPVVPIVPI 741
>Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical
protein F13D12.3 protein.
Length = 245
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 60 LIPPPCLRRATHVKARAAEERLPA-GPIAPVAPTVPVGMGNHPEA 191
++PPP V E +PA GP+AP P+ P+ G P A
Sbjct: 142 IVPPP----VPEVSEPVPEPPIPAPGPVAPPTPSGPLFGGVEPGA 182
>U82936-1|AAB40869.1| 682|Caenorhabditis elegans protein kinase C2
B isoform protein.
Length = 682
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 126 PAGPIAPVAPTVPVGMGNH 182
P P AP A T+P+G NH
Sbjct: 322 PKDPAAPRASTLPLGSSNH 340
>U82935-1|AAB40868.1| 680|Caenorhabditis elegans protein kinase C2
A isoform protein.
Length = 680
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 126 PAGPIAPVAPTVPVGMGNH 182
P P AP A T+P+G NH
Sbjct: 322 PKDPAAPRASTLPLGSSNH 340
>U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical
protein C49H3.6b protein.
Length = 498
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +3
Query: 57 QLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVP-VGMGNHPEASHAAKEALKSRI 227
Q PPP R + RLP P V VP + +G+ P +S + S +
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPV 413
>U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical
protein C49H3.6a protein.
Length = 552
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +3
Query: 57 QLIPPPCLRRATHVKARAAEERLPAGPIAPVAPTVP-VGMGNHPEASHAAKEALKSRI 227
Q PPP R + RLP P V VP + +G+ P +S + S +
Sbjct: 356 QPAPPPVARLPNSATFPTEKSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMSSPV 413
>U29376-5|AAA68709.2| 936|Caenorhabditis elegans Protein kinase c
protein 2, isoformc protein.
Length = 936
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 126 PAGPIAPVAPTVPVGMGNH 182
P P AP A T+P+G NH
Sbjct: 462 PKDPAAPRASTLPLGSSNH 480
>U29376-4|AAM51504.1| 682|Caenorhabditis elegans Protein kinase c
protein 2, isoformb protein.
Length = 682
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 126 PAGPIAPVAPTVPVGMGNH 182
P P AP A T+P+G NH
Sbjct: 322 PKDPAAPRASTLPLGSSNH 340
>U29376-3|AAM51503.1| 680|Caenorhabditis elegans Protein kinase c
protein 2, isoforma protein.
Length = 680
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 126 PAGPIAPVAPTVPVGMGNH 182
P P AP A T+P+G NH
Sbjct: 322 PKDPAAPRASTLPLGSSNH 340
>AC024763-6|AAO12403.1| 603|Caenorhabditis elegans Calpain family
protein 4, isoform b protein.
Length = 603
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 108 AAEERLPAGPIAPVAPTVPV 167
A + +PA P APVAP PV
Sbjct: 179 APKPAVPATPKAPVAPVAPV 198
>AC024763-5|AAO12402.1| 716|Caenorhabditis elegans Calpain family
protein 4, isoform a protein.
Length = 716
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 108 AAEERLPAGPIAPVAPTVPV 167
A + +PA P APVAP PV
Sbjct: 179 APKPAVPATPKAPVAPVAPV 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,416,184
Number of Sequences: 27780
Number of extensions: 92287
Number of successful extensions: 335
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -