Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_L02
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 29 0.33
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 27 1.0
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 2.3
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 25 4.1
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 25 4.1
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 4.1
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 5.4
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 25 5.4
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 24 9.4
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 24 9.4
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 168 EFEKENPNILLLDKDGQFENM*TNYKLFGREKKTTLCSSNMHKQA-VFNQIIKEKVSKLL 344
E ++PNI+ D D + TNY +F + S ++ Q V+++ IK V+K
Sbjct: 270 ELGGKSPNIVFNDADLDSAAVWTNYGIFYNSGQVCCAGSRVYVQEDVYDEFIKRMVAKAK 329
Query: 345 IFQMYD 362
++ D
Sbjct: 330 TLKVGD 335
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 129 GEWTDEQRDRKPTEFEKENPNILLLDK 209
G+ T + +D+K EKE P++ +LDK
Sbjct: 329 GDGTSKVKDKKAKNNEKEVPDLAILDK 355
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.2 bits (55), Expect = 2.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 144 EQRDRKPTEFEKENPNILLL 203
EQRD++ K+NPN+L +
Sbjct: 270 EQRDKEALRIAKQNPNVLAM 289
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 111 EWGAGEGEWTDEQRDRKPTEFEKENPNILL 200
+W DE++DR E E E NI+L
Sbjct: 3 KWEIANEVCVDEKQDRDAEEIEDEGKNIIL 32
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +3
Query: 39 AKHDTEVEMIKAREQIDVIGEKVGEWGAGEGEWTDEQRDRKPTEFEKEN 185
+ HD ++++ ++ + G + E WT E+++R EK N
Sbjct: 40 SNHDLKIQINVPERKVLLSGPLEKQINLDESTWTVEEQERLVIHLEKSN 88
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 4.1
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 144 EQRDRKPTEFEKENPNILLLDKDGQFENM*TNYKLFGREKKTTLCSSNMHKQA 302
EQ DR+ E KE + + D E+ + K++GR + + SN+HK +
Sbjct: 607 EQVDREWYEIHKEAKSEIEKDSSKPTEDQESKLKVYGRVAYSRI--SNLHKSS 657
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 196 SCWTRTDSLRTCELITSYLEEKKKP 270
+C T T + TC LI Y EK+ P
Sbjct: 153 TCHTDTHTSSTCPLIWRYYVEKEHP 177
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 126 EGEWTDEQRDRKPTEFEKENPNILLLD 206
EGEW D + TE E E+ ++LD
Sbjct: 380 EGEWLDPNDQVQSTELEDEDQVSVVLD 406
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 132 EWTDEQRDRKPTEFEKENPNILLLDKDGQFEN 227
EW D R+ + F + PN+L+ D+D +F N
Sbjct: 1852 EWYDGLRNIR---FGIQRPNLLIYDEDKKFIN 1880
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 24.2 bits (50), Expect = 9.4
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 33 KFAKHDTEVEMIKAREQIDVIGEKVGEWGAGEGEWTDEQRD-RKPTEFEKENPNILLLDK 209
K A+ + + E KARE+ + EW EW + RK + +++ +
Sbjct: 166 KKAREEDKAEWKKAREEDKEWRNSMDEWRKSMDEWRKSMDEWRKSMDEWRKSTDEWRKST 225
Query: 210 DGQFENM 230
D + EN+
Sbjct: 226 DERLENL 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,658
Number of Sequences: 5004
Number of extensions: 30473
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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