Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L02
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256...    30   0.75 
11_06_0399 - 23129476-23129745,23131040-23131121,23131216-231317...    30   0.99 
03_03_0097 + 14386262-14386532,14387696-14387919,14388057-143883...    27   5.3  
07_01_0873 - 7257016-7257957,7260083-7260262                           27   9.2  
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507...    27   9.2  
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508...    27   9.2  

>01_01_0316 +
           2565704-2566134,2566682-2566845,2566989-2567152,
           2567594-2567720,2568347-2568450
          Length = 329

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 87  DVIGEKVGEWGAGEGEWTDEQRDRKPTEFEKENPNI 194
           D IG  VGE  A +G W + +  R   +  KENP I
Sbjct: 103 DAIGGDVGEGAASQGCWLEPELGRFAFQSYKENPLI 138


>11_06_0399 -
           23129476-23129745,23131040-23131121,23131216-23131711,
           23132135-23132699,23132825-23132893
          Length = 493

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 9   QMYANMFDKFAKHDTEVEMIKAREQIDVIGEKVGE--WGAGEGEWTDEQRDRKPTEFEKE 182
           Q  A + +  +K + E E+ K+    +     VGE   GAG+  W D+ R +    +++E
Sbjct: 322 QFDAMLINWSSKEEEEEEVSKSLRHFEASVAAVGEKRGGAGDCRWEDDDRAKSCIRYQRE 381

Query: 183 NPNI 194
              I
Sbjct: 382 EAKI 385


>03_03_0097 +
           14386262-14386532,14387696-14387919,14388057-14388307,
           14388393-14388771,14388958-14389389
          Length = 518

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 132 EWTDEQRDRKPTEFEKENPNILLLDK 209
           EW D  R+    E  KENPN  +L K
Sbjct: 347 EWQDRLREEVLRECRKENPNADMLSK 372


>07_01_0873 - 7257016-7257957,7260083-7260262
          Length = 373

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 72  AREQIDVIGEKVGEWGAGEGEWTDEQR 152
           AR+  D +GE     GAGEGE  +  R
Sbjct: 12  ARKAADAVGEAAAAAGAGEGESPEAAR 38


>03_05_1021 -
           29750155-29750220,29750342-29750428,29750614-29750799,
           29750965-29751059,29751179-29751284,29751378-29751452,
           29751548-29751679,29751782-29751961,29752371-29752567,
           29752651-29752906
          Length = 459

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 270 TLCSSNMHKQAVFNQIIKEKVSKLLI 347
           T+C +   +Q    Q++KEKV  +L+
Sbjct: 341 TICDATQERQDAMYQLVKEKVDLILV 366


>03_02_0025 +
           5084003-5084303,5084449-5084639,5084793-5084873,
           5084972-5085319,5085409-5086293
          Length = 601

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 42  KHDTEVEMIKAREQIDVIGEKVGEWGAGEGEWTDEQRDRKPTEFEKE 182
           +  T +      E+++   E+  E G G+GE   E+ +R+  E E+E
Sbjct: 450 RESTIMACTSCAEELERKAEEEEEGGGGKGEKEREEEERRQREKEEE 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,350,124
Number of Sequences: 37544
Number of extensions: 180944
Number of successful extensions: 554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)