Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L02
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0)                29   1.8  
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)               28   4.1  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        28   4.1  
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_47134| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        27   9.5  

>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2214

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 24   MFDKFAKHDTEVEMIKAREQIDVIGEKVGEWGAGEGEWTDEQRDRKPTEFEKENP 188
            M DK +   T VE +  +   +  G   GEWG  + +WTD   D+  +  EK  P
Sbjct: 952  MHDKDSGRKTFVEELYEQGARNFPG---GEWGGAKIQWTDVGGDQTTSPQEKATP 1003


>SB_38608| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
          Length = 842

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 33  KFAKHDTEVEMIKAREQIDVIGEKVGEWGAGEGEWTDEQRDRKPTEFEKENPNILLLDKD 212
           K  + D +VE+++ R       E  G WG G  EW      +  +++EK++   L  + D
Sbjct: 437 KTRRGDLDVELVRVRNPWGNEREWKGAWGDGSSEW------QLLSDYEKKSIG-LTFEDD 489

Query: 213 GQF 221
           G+F
Sbjct: 490 GEF 492


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 118 EPERESGLTSRETGNPQSSRRKTRTYSCWTRTDSLRTCELITSYLEEK 261
           E ER+  LTS+  GN ++ RRK    +     D  R  +L  S L +K
Sbjct: 708 EAERQEKLTSKVRGNLEARRRKDIDQNTENDPDKKRRVQLKASTLVKK 755


>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
          Length = 1890

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 80  LSRFYHLHLRIMFGELVEHVRVH 12
           L R  H H + +FG LV HVR H
Sbjct: 272 LFRLPHCHAQQVFGLLVSHVRAH 294


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 255 REKKTTLCSSNMHKQAVFNQIIKEK 329
           REK++ L  +N  K+ VFN +  EK
Sbjct: 917 REKESALVQANQEKEEVFNALTNEK 941


>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 121 PERESGLTSRETGNPQSSRRKTRTYSCWTRTDSLRTCELITSYLEEKKKPHYVLATCIN 297
           P++    T+      Q   R+   YS  T+T SL   E ITS+   K+   Y L+   N
Sbjct: 83  PKKSQNRTANAAVTAQLIYRRNGCYSQSTKTWSLSKTETITSFENWKQNLMYTLSLDTN 141


>SB_47134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 105 VGEWGAGEGEWTDEQRDRKPTEFEKEN 185
           V  W AGE    +E+    P E E+EN
Sbjct: 178 VATWDAGEDSEEEEEEPEIPNELEEEN 204


>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 885

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 151 ETGNPQSSRRKTRTYSCWTRTDSLRT 228
           ++  PQ S   +R++ CW RT S  T
Sbjct: 127 QSNMPQGSLSTSRSHDCWKRTSSKPT 152


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
 Frame = -3

Query: 418 RLLIYQRHNTYQKRNLNAKSYI*NINNFDTFS------LII*LKTACLCML--LEHNVVF 263
           +L++ QR + Y       KSY+  +++F+ ++      LI     AC   +  L H   F
Sbjct: 650 KLVLGQRQDAYGGSFAEGKSYVGAMSHFNMWNESTSDHLIKERSRACAVEMADLVHWRKF 709

Query: 262 FSLPNNL*LVHMFSNCPSLSNKSMFGFSFSNSV---GFLS 152
           +   +    + + SNC S    S + FSF N+    G+LS
Sbjct: 710 YDSSHGDVRMQLPSNCQSRDPVSTYPFSFKNATFLYGYLS 749


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,403,054
Number of Sequences: 59808
Number of extensions: 220606
Number of successful extensions: 681
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)