Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L02
         (450 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   3.6  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   3.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   4.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.2  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.2  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 442 MKYKLIN--NRLLIYQRHNTYQKRNLNAKSYI*NINNFDTFSLII*LKTACLC 290
           MK ++I     LL +Q   + +  N    SY+ N  N+D  + ++ LK    C
Sbjct: 1   MKMRIITALGFLLFWQNSASLENDNEFGFSYLLNCKNYDHPTTLLKLKRYLFC 53



 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 135 WTDEQRDRKPTEFEKEN 185
           WTD     KP++F+  N
Sbjct: 99  WTDSHLSWKPSDFDGIN 115


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -3

Query: 424 NNRLLIYQRHNTYQKRNLNAKSYI*NINNFDTFSLII*LKTAC 296
           NN       +N Y   N N K Y  NI N +   + + +   C
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYY-NIINIEQIPVPVPVPVYC 132


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -3

Query: 424 NNRLLIYQRHNTYQKRNLNAKSYI*NINNFDTFSLII*LKTAC 296
           NN       +N Y   N N K Y  NI N +   + + +   C
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYY-NIINIEQIPVPVPVPVYC 132


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 210 PCPTRVCSGFPSRTLWVSCLS 148
           P P RV   FPS   W   +S
Sbjct: 226 PLPVRVLPNFPSSGHWQDQMS 246


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 418 RLLIYQRHNTYQKRN 374
           RLL+ +R+NT  KR+
Sbjct: 351 RLLVMRRYNTPSKRS 365


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 105 VGEWGAGEGEWTDEQRDRKPTEFEKENPNI 194
           VG +G     W +E++     +F  E P++
Sbjct: 165 VGVFGGSAWSWREERQAYYLHQFAPEQPDL 194


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +3

Query: 87   DVIGEKVGEWGAGEGEW--TDEQRD 155
            + +G+   EW  G+GE   TD  R+
Sbjct: 1336 NAVGDPTREWYKGQGEQIRTDSTRN 1360


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +3

Query: 87   DVIGEKVGEWGAGEGEW--TDEQRD 155
            + +G+   EW  G+GE   TD  R+
Sbjct: 1332 NAVGDPTREWYKGQGEQIRTDSTRN 1356


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 105 VGEWGAGEGEWTDEQRDRKPTEFEKENPNI 194
           VG +G     W +E++     +F  E P++
Sbjct: 165 VGVFGGSAWSWREERQAYYLHQFAPEQPDL 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,490
Number of Sequences: 438
Number of extensions: 2213
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)