Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L01
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       23   1.7  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   1.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   1.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   5.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.7  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   8.9  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 345 KNQKKQVEMQKKKNASEKTGMSLQERKHRDAELMREKQRKKEQE 476
           +  K + E++  K  +E+     +E++ R  +  +EKQ+K EQ+
Sbjct: 57  RRMKLKKELRAVKEINEQARREREEQE-RHKQQQQEKQQKIEQQ 99


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 345 KNQKKQVEMQKKKNASEKTGMSLQERKHRDAELMREKQRKKEQE 476
           +  K + E++  K  +E+     +E++ R  +  +EKQ+K EQ+
Sbjct: 208 RRMKLKKELRAVKEINEQARREREEQE-RHKQQQQEKQQKIEQQ 250


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 345 KNQKKQVEMQKKKNASEKTGMSLQERKHRDAELMREKQRKKEQE 476
           +  K + E++  K  +E+     +E++ R  +  +EKQ+K EQ+
Sbjct: 267 RRMKLKKELRAVKEINEQARREREEQE-RHKQQQQEKQQKIEQQ 309


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 77   LLNSLWLLSFGFCIQVF 127
            LLN ++L   GFC+  F
Sbjct: 1128 LLNCVYLFLCGFCVYEF 1144


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
          protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 60 TCIRNVSSIVCGC 98
          TCI  ++S +C C
Sbjct: 37 TCIDGINSYICTC 49


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 301 NIFVDNLTKLGRYKVVEITQVQFRMILRPGRYASLA 194
           ++ V N   L ++KV+   Q    + L  G Y+ LA
Sbjct: 23  SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLA 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,628
Number of Sequences: 336
Number of extensions: 2017
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)