Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L01
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ...    44   1e-05
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    33   0.026
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    31   0.11 
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    30   0.19 
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    29   0.32 
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    28   0.99 
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   1.3  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   2.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.3  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   3.0  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    26   3.0  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   4.0  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    25   5.3  
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    25   5.3  
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.3  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.2  

>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 63

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 25/55 (45%), Positives = 34/55 (61%)
 Frame = +3

Query: 309 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGMSLQERKHRDAELMREKQRKKEQ 473
           M+RGNQRD+ RA+N KK  +  KKK A + T     +R    AE+MR KQR  ++
Sbjct: 1   MSRGNQRDVDRARNLKKS-QASKKKQAGDPT-----KRLEAQAEIMRAKQRAADE 49


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 33.1 bits (72), Expect = 0.026
 Identities = 16/65 (24%), Positives = 38/65 (58%)
 Frame = +3

Query: 282 RLSTKILTKMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGMSLQERKHRDAELMREKQR 461
           RL+ +   K     +++ AR K ++++++ +++K   E   +  Q+R+ +  +  REK+ 
Sbjct: 619 RLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQE---LERQKREEKQKQKEREKKL 675

Query: 462 KKEQE 476
           KK+Q+
Sbjct: 676 KKQQQ 680



 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 324 QRDLARAKNQKKQV-EMQKKKNASEKTGMSLQERKHRDAELMREKQRKKEQE 476
           Q+   R K  KKQ  E  ++K A E+     +E++  +    REK  K+E+E
Sbjct: 666 QKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEE 717



 Score = 25.8 bits (54), Expect = 4.0
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = +3

Query: 285 LSTKILTKMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGMSLQERK------HRDAELM 446
           L  K   +  +  +    + + +KKQ E++++K   EK     +E+K        D E M
Sbjct: 629 LEAKRQEEARKKREEQRLKREQEKKQQELERQKR-EEKQKQKEREKKLKKQQQEADREKM 687

Query: 447 REKQRKKEQE 476
             +QR +E+E
Sbjct: 688 AREQRLREEE 697


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 18/66 (27%), Positives = 37/66 (56%)
 Frame = +3

Query: 279 VRLSTKILTKMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGMSLQERKHRDAELMREKQ 458
           V L+  I   M   NQ+++ +A+ ++++   Q+K+   EK  ++ +E   R A+ + EK+
Sbjct: 619 VDLNKIISAAMESVNQKNVLKAQKEEEERIAQQKR--EEKRRLAYEESLKRHAKKLHEKK 676

Query: 459 RKKEQE 476
            K  Q+
Sbjct: 677 TKSSQD 682


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
            complex subunit Tpr1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1039

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 306  KMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGMSLQERKHRDAELMREKQRKKEQ 473
            K  R  Q    R K Q++ +E +K +  + +  MSL + + + +   ++K RKK +
Sbjct: 896  KQERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEEKQSGKKKKKDRKKRK 951


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +3

Query: 189 VSARLAYRPGLNIILN*TCVISTTLYLPSFVRLSTKI 299
           VS   A +PG+ IIL  T ++++T Y+   + +ST+I
Sbjct: 521 VSEFNATQPGVRIILAGTTILNSTAYIDDIMYMSTRI 557


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
 Frame = +3

Query: 336 ARAKNQKKQVEMQKKKNASE--------KTGMSLQERKHRDAELMREKQRKK 467
           A A   +KQ E +KKK+A E        KT    QE + R A L R+ +R++
Sbjct: 11  AEAAKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAALERKAERER 62


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = +3

Query: 315 RGNQRDLARAKNQKK--QVEMQKKKNASEKTG---MSLQERKHRDAELMREKQRKKEQ 473
           R  Q++  R K +K+  Q E +KK    EK     M   E+  ++   ++E+QR+KE+
Sbjct: 89  RIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEE 146


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 339 RAKNQKKQVEMQKKKNASEKTGMSLQERKHRDAE 440
           +AKN+KK+ + QKKK  + K  +  Q   +   E
Sbjct: 95  KAKNKKKKKKQQKKKKVTGKRDLDNQSSDNEKLE 128


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 324 QRDLARAKNQKKQVEMQKKKNASEKTGMSLQERKHRDAELMREKQRKKEQE 476
           + ++A  +  K + + +KKK   E+    LQE   +DAE+        E E
Sbjct: 391 REEVAAVEAAKIRADEEKKKKEREEQVRLLQESADKDAEMNEASTATSENE 441


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +3

Query: 333 LARAKNQKKQVE--MQKKKNASEKTGMSLQERKHRDAELMREKQRKKEQ 473
           LA  + ++KQ++  M+K+K + +    S +ER+HRD      + R +E+
Sbjct: 140 LAIKQQEQKQLQTLMEKRKYSLDSDRKS-KERRHRDRHHRSNQDRSRER 187



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 354 KKQVEMQKKKNASEKTGMSLQERKHRDAELMREKQRK 464
           +K  +  K+ + S +  + L E+K RD E   EK+R+
Sbjct: 298 QKMQDNAKELDESRRKKIELLEKKERDEEQFLEKERR 334


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 294 KILTKMTRGNQRDLARAKNQKKQVEMQKKKNASEKT--GMSLQERKHRDAELMRE 452
           K L K+   N +   + K  + QV  +KKK   EKT  G  L E+   D + + E
Sbjct: 28  KELEKILERNNKQ--KNKKSRNQVRREKKKLLREKTNSGAKLAEKNSDDKDQLTE 80


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 257 NFIPSQLCEIIYKNIDQNDAWKPERFG 337
           +F P++L EII K +   + W P++ G
Sbjct: 119 SFDPAELAEIIRKFVAHENRWVPDQRG 145


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = +3

Query: 300 LTKMTRGNQRDLARAKNQKKQVEMQKKKNASEKTGMSLQERKHRDAELMREKQRKKEQ 473
           L      N       +N+      Q+ KNA  K+  S ++    D  +  EK RK+ +
Sbjct: 180 LASSNNKNHNQSKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDPIEAEKARKRAE 237


>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +3

Query: 324 QRDLARAKNQKKQVEMQKKKNASEKTGMSLQERKHRDAELMREK 455
           Q++   AK QK+ +E++KK+   E+T   L ++  R   +MR +
Sbjct: 90  QQEKEDAKVQKR-LEIEKKQKDREQTRNMLSKKTKRGQPIMRNQ 132


>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +3

Query: 396 KTGMSLQERKHRDAELMREKQRKKEQ 473
           K G+S  ER  RD + +R+KQ+K++Q
Sbjct: 408 KRGLSSTER--RDLDRVRDKQKKQDQ 431


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 288 STKILTKMTRGNQRDLARAKNQKKQVEMQKKK 383
           ST+ LTK  R NQ+   RAK  ++  + ++++
Sbjct: 195 STEPLTKRQRQNQQKKLRAKEMQELADEEQRR 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,647
Number of Sequences: 5004
Number of extensions: 31303
Number of successful extensions: 131
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)