Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_L01
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.48 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.63 
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           25   0.63 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.63 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 332 ISLVSTRHFGQYFCR*SHKAG 270
           IS+++ RH G+Y C   + AG
Sbjct: 645 ISVITARHAGEYVCTAENAAG 665


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 163 IRRAVRCPRFRPG*RIVRALISF 231
           ++  +RC R+RP   IV  L +F
Sbjct: 266 VKEMIRCLRYRPARAIVETLANF 288


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 163 IRRAVRCPRFRPG*RIVRALISF 231
           ++  +RC R+RP   IV  L +F
Sbjct: 137 VKEMIRCLRYRPARAIVETLANF 159


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.63
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 163 IRRAVRCPRFRPG*RIVRALISF 231
           ++  +RC R+RP   IV  L +F
Sbjct: 266 VKEMIRCLRYRPARAIVETLANF 288


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 336 ARAKNQKKQVEMQKKKNASEKTG 404
           ARAK + K+ E   KK  S K+G
Sbjct: 332 ARAKKKSKKKESDDKKVISSKSG 354


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 332 ISLVSTRHFGQYFCR*SHKAGKV 264
           IS V     G+Y C   ++AGKV
Sbjct: 486 ISHVMVEDGGEYSCMAENRAGKV 508


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 332 ISLVSTRHFGQYFCR*SHKAGKV 264
           IS V     G+Y C   ++AGKV
Sbjct: 486 ISHVMVEDGGEYSCMAENRAGKV 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,729
Number of Sequences: 438
Number of extensions: 2370
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)