Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K24
         (489 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004999BF Cluster: hypothetical protein 4.t00087; n...    33   4.5  
UniRef50_Q9VHT4 Cluster: Probable GDP-fucose transporter; n=5; E...    33   4.5  
UniRef50_UPI00006CFB0C Cluster: cyclic nucleotide-binding domain...    32   6.0  
UniRef50_Q9G8S4 Cluster: NADH-ubiquinone oxidoreductase chain 4L...    32   6.0  
UniRef50_Q54CT6 Cluster: Putative uncharacterized protein; n=1; ...    32   6.0  

>UniRef50_UPI00004999BF Cluster: hypothetical protein 4.t00087; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 4.t00087 - Entamoeba histolytica HM-1:IMSS
          Length = 315

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -2

Query: 473 RTSVIVYYTCLFRFRIETINGNVIILFTLRVIIAQGLNIIIEYFKLYI*YK 321
           ++S+I+    +   R++TI    +I + + + + +G+NIII     Y  YK
Sbjct: 108 KSSIIIGIIPIISLRLDTILKGDVIYYFIPIFVVEGINIIIRINTFYFNYK 158


>UniRef50_Q9VHT4 Cluster: Probable GDP-fucose transporter; n=5;
           Endopterygota|Rep: Probable GDP-fucose transporter -
           Drosophila melanogaster (Fruit fly)
          Length = 337

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 313 WLLLYHIYNLKYSIIMFKP*AIITRRVNNIITFPFI 420
           WLL Y  YN  YS ++F P  II   + +IIT+P +
Sbjct: 206 WLLSY--YNNLYSTLLFLPLIIINGELESIITYPHL 239


>UniRef50_UPI00006CFB0C Cluster: cyclic nucleotide-binding domain
           containing protein; n=1; Tetrahymena thermophila
           SB210|Rep: cyclic nucleotide-binding domain containing
           protein - Tetrahymena thermophila SB210
          Length = 1142

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 14/47 (29%), Positives = 31/47 (65%)
 Frame = +1

Query: 310 KWLLLYHIYNLKYSIIMFKP*AIITRRVNNIITFPFIVSILNLNKHV 450
           ++L L+ I+N+++ I +F+   I+  + +NII+   ++ IL ++ HV
Sbjct: 319 QFLFLFKIHNIQHVIYVFQKTFIMNEKYDNIISLLRLMGILCISSHV 365


>UniRef50_Q9G8S4 Cluster: NADH-ubiquinone oxidoreductase chain 4L;
           n=1; Naegleria gruberi|Rep: NADH-ubiquinone
           oxidoreductase chain 4L - Naegleria gruberi
          Length = 87

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 461 IVYYTCLFRFRIETINGNVIILFTLRVIIAQ---GLNIIIEYFKLY 333
           I YY   F + ++ + G V  L  L V  ++   GL III Y+KLY
Sbjct: 40  INYYLIFFSYFLDDLLGQVFSLLILSVAASESAIGLAIIISYYKLY 85


>UniRef50_Q54CT6 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 975

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 181 FITYFLCVFVLNTYLKFW**VYFQIYDEAN*VIVTALTCFQFTKWLLLYHI 333
           F   F  +F+ + Y ++   +    Y   N  IVT +T + FTKW LL H+
Sbjct: 6   FSIIFTLLFINSIYSQYVSPLRINYYLNDNITIVTNVTKYYFTKWSLLRHV 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 379,051,056
Number of Sequences: 1657284
Number of extensions: 6321990
Number of successful extensions: 11966
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11964
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)