Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K24
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-17|CAD60413.1|  303|Caenorhabditis elegans Hypothetical p...    27   7.3  
Z49909-2|CAB60994.1|  375|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF058329-1|AAD20727.1|  375|Caenorhabditis elegans unknown protein.    27   9.7  

>Z49909-17|CAD60413.1|  303|Caenorhabditis elegans Hypothetical
           protein C14A4.15 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +1

Query: 253 IYDEAN*VIVTALTCFQFTKWLLLYHIYNLK---YSIIMF 363
           IY   + VIV A+TCFQ    LL +H+++L    Y I+++
Sbjct: 219 IYACLSTVIVLAMTCFQS---LLAFHVFDLSAKAYQIVLW 255


>Z49909-2|CAB60994.1|  375|Caenorhabditis elegans Hypothetical
           protein C14A4.2 protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 322 LYHIYNLKYSIIMFKP*AIITRRVNNIITFPFIVSILN 435
           ++H YN K++I+  +    +TRRV  I    F+   +N
Sbjct: 112 VHHAYNNKWAIVHLRSAMELTRRVKEIEMSSFVQGRIN 149


>AF058329-1|AAD20727.1|  375|Caenorhabditis elegans unknown protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 322 LYHIYNLKYSIIMFKP*AIITRRVNNIITFPFIVSILN 435
           ++H YN K++I+  +    +TRRV  I    F+   +N
Sbjct: 112 VHHAYNNKWAIVHLRSAMELTRRVKEIEMSSFVQGRIN 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,224,954
Number of Sequences: 27780
Number of extensions: 159420
Number of successful extensions: 314
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)