Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K23
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    49   4e-07
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    46   4e-06
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    38   6e-04
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    33   0.032
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    30   0.17 
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    29   0.29 
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   2.7  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   2.7  
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    25   4.8  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   4.8  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    25   4.8  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   4.8  
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2...    25   4.8  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.3  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    25   6.3  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   6.3  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   8.4  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    25   8.4  

>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
 Frame = +2

Query: 20  LAWYLWTQRRHLRGLRVLELGCGTGLPGILAAKCGARVVLTDSVALPRSLRHLSSCCEAN 199
           LA Y+      +R  +VLELG G GLP I++A  GA+ V++     P  + +L    +  
Sbjct: 64  LANYIDKNPDTVRAKKVLELGAGAGLPSIVSAFDGAKFVVSTDYPDPALIDNLEHNVKQY 123

Query: 200 GLVPNRDVQIVGLSWGLFLSEI------HNLQPVDLLLASDCFYEPTQFEEVLSTVAYLL 361
             + ++ +  VG  WG  + E+       + +  D+LL SD  +  T+  +++ +    +
Sbjct: 124 AEIASK-ISAVGYLWGSNIKEVMSNAGFKDNEVFDILLLSDLVFNHTEHSKLIKSCKMAI 182

Query: 362 EG 367
           EG
Sbjct: 183 EG 184


>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 36/100 (36%), Positives = 48/100 (48%)
 Frame = +2

Query: 5   EAAPLLAWYLWTQRRHLRGLRVLELGCGTGLPGILAAKCGARVVLTDSVALPRSLRHLSS 184
           EA   LA Y++ Q     G+RVLELG GTGL  IL AK G+ V+ TD          +  
Sbjct: 154 EAGMALAEYIY-QHPVQSGMRVLELGAGTGLVSILCAKMGSIVLATDGDT------KVCD 206

Query: 185 CCEANGLVPNRDVQIVGLSWGLFLSEIHNLQPVDLLLASD 304
               N  + N D+ +  L WG+   E       D++ ASD
Sbjct: 207 GVRENARLNNCDINVKKLLWGVDPPEFS-----DIVFASD 241


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
 Frame = +2

Query: 8   AAPLLAWYLWTQRRHLRGLRVLELGCGTGLPGILAA-KCGARVVLTDSVALPRSLRHLSS 184
           +APLL+  L         +  LELG GTGL GI AA + G +VV TD   LP  + ++  
Sbjct: 119 SAPLLSANLPKWEDLSNSINALELGAGTGLVGISAAIQLGWQVVCTD---LPDIVENMQY 175

Query: 185 CCEANGLVPNR---DVQIVGLSWGLFLSEIHN----LQPVDLLLASDCFYEPTQFEEVLS 343
             + N  +  +    V    L W     + +     ++P   ++ASDC YE T F E+  
Sbjct: 176 NVDYNSELIQQYAGSVSCHVLDWMNPPDDDNRPSWLIKPFQRIIASDCIYE-THFGELAI 234

Query: 344 TVAYLLEGTDARFLCSYQERST 409
            +       D   +  Y  R T
Sbjct: 235 ALFRKYLAKDGIVITEYPLRET 256


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 32.7 bits (71), Expect = 0.032
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 29  YLWTQRRHLRGLRVLELGCGTGLPGILAAKCGARVV 136
           +++  +    G  VL++GCGTG+  +  AK GA+ V
Sbjct: 246 FVYHNKHIFAGKTVLDVGCGTGILSMFCAKAGAKKV 281


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 41  QRRHL-RGLRVLELGCGTGLPGILAAKCGARVV 136
           Q  HL R   VL++GCGTG+  +  A+ GA+ V
Sbjct: 48  QNPHLFRDKIVLDVGCGTGILSMFCARAGAKHV 80


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
 Frame = +2

Query: 5   EAAPLLAWYLWTQRRHLRGLRVLELGCG-TGLPGILAAKCGARVVLTDSVALPRSLRHLS 181
           +  P L    W          +LELG G +GL GIL +      V +D     + +R   
Sbjct: 77  KVVPWLLQQSWFMNSLTPKTSILELGSGISGLAGILLSPFVGNYVASDKQLYLKKIRENL 136

Query: 182 SCCEANGLVPNRDVQIVGLSW-GLFLSEIHNLQPVDLLLASDCFYEPTQFEEVLSTVAYL 358
               A+      DV++  L W      +      +D +L  DC Y P     ++S +A L
Sbjct: 137 DQNNAS------DVEVHELDWKSTPYPKDWTFDFLDYVLFFDCIYNPHLNAHLVSCLASL 190

Query: 359 LE 364
            E
Sbjct: 191 AE 192


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 240 DRPTICTSRLGTKPLASQHDDKCRRDLGKATLSVRTTRAPHFAAKIPGKPVPQP 79
           +R +I ++ +GT P A +   K    + +  +S  T +     A IP KP PQP
Sbjct: 76  NRASIMSATMGTPPSALKFSKK---KISRPVVSEDTFKDKLPRATIPVKPEPQP 126


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 438 FLSKASIDQSVLRSW*EHKNRASVPSSR 355
           F+SKASI   V+ S+  HK   +V S+R
Sbjct: 759 FVSKASITSGVIESYGLHKRVEAVKSTR 786


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 114 AAKIPGKPVPQPSSRTRNPRKCLL 43
           AA +  KP  +PSS T+  ++C+L
Sbjct: 178 AAMLKHKPKVKPSSGTKKKKRCIL 201


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 89  TGLPGILAAKCGARVVLTDSVALP-RSLRHLSSCCEANG 202
           TG+  ++++K GA+VVLT +  +  R +  L     ANG
Sbjct: 496 TGIAALVSSKDGAKVVLTGNHRMKVRPIGPLVDALRANG 534


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 201 PLASQHDDKCRRDLGKATLSVRTTRAPHFAAKI 103
           PLA+      R D GK  L ++T    HF +K+
Sbjct: 44  PLANSRYATVREDNGKLYLYMKTIERAHFPSKL 76


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 260 EIHNLQ-PVDLLLASDCFYEPTQFEEVLSTVAYLLEGTDARFL 385
           E+ N+  P   LL    + EP +   VL+++AY +EG+D R +
Sbjct: 284 EVENVDVPGRTLLKVPGYDEPVEVG-VLTSIAYAVEGSDERIV 325


>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
           Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 212 NRDVQIVGLSWGLFLSEIHNLQPVDLLLASDCFYEPTQFE 331
           +RDV   G S G+ LS++H     D+LL  +    P +++
Sbjct: 273 SRDVAAEGYSTGIILSQLH-----DVLLKEETLSSPVKYK 307


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 248 GPTIGRLFARHGWVPSRWLHNTMINVAEIL 159
           G   G +FAR+   P+RWL  ++   A  +
Sbjct: 84  GGMAGNIFARNRIAPARWLITSLSTAATFM 113


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
 Frame = +2

Query: 41  QRRHLRGLRVLELGCGTGLPGILAAKCGARVVLTDSVALPRSLRHLSSCCEANGLVPNRD 220
           Q   ++ L   E+GCG+G       K G   +L +   +       +S C A+ +    +
Sbjct: 41  QMAEMKNLLTAEIGCGSGCASSF-LKSG---ILKNKPIVHFMSDISNSACRASKITALNN 96

Query: 221 VQIVGLSWGL-------FLSEIHNLQPVDLLLASDCFYEPTQFEEVLSTVA 352
            ++     GL       FL  I     VD+L+ +   Y PT+FEE+ S  A
Sbjct: 97  RELYKDDNGLFITVQTSFLDGIRLGNGVDILIFNPP-YVPTEFEEIPSEAA 146


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -3

Query: 108 KIPGKPVPQPSS 73
           K P KPVPQPSS
Sbjct: 321 KEPAKPVPQPSS 332


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 261 SDKKRPHDRPTICTSRLGTKPLASQHDDK 175
           S ++ P+DR T+ +S+   +PL   + +K
Sbjct: 166 SSQQPPNDRSTLSSSQKAKRPLKRSYSEK 194


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 365 PQVGKLRWKVPLRTE 321
           P VGKLRW+ P+  E
Sbjct: 29  PPVGKLRWRRPVTLE 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,544
Number of Sequences: 5004
Number of extensions: 38612
Number of successful extensions: 164
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)