Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K22
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.39 
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   1.2  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    27   2.1  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    26   2.8  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   4.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   8.4  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 220 NLHCLAGSITMLELLYVQASSEKSVTINF-DSSISFEFSLRKLSTTVFPSPSKVLVLDRI 396
           NL+C+     +L LL    + E S+ +NF D  +S E  L  L T   P     +     
Sbjct: 413 NLNCIELVQILLRLLSEVVTYETSLFLNFLDEKVSAELLL--LGTLQLPLAWNPV--QES 468

Query: 397 QRFTWCELFFSSY 435
             F WC  FFS++
Sbjct: 469 LAFQWCSDFFSNF 481


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -1

Query: 359 KTVVDNFLKENSKEIDESKLIVTD 288
           +T+++ +L ENSK IDE+ L +TD
Sbjct: 877 RTLLNFYLIENSKTIDEATLQLTD 900


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -1

Query: 476 ATDYTSYAVSYTCKYDEKNNSHQVNLWILSRTKTLEGEGKTVVDNFLKENSK 321
           ++ + + +  Y+CK  + N    +  W+ S  K L G      D  +  NSK
Sbjct: 243 SSQFVTSSAGYSCKIWDANTGSLIREWLSSDKKQLVGTVWPTKDLIIVVNSK 294


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 237 WLHNDAGTAIRTGVIREVCYDQFRFINLL 323
           W++ND        +IR+VC D    +NL+
Sbjct: 351 WINNDFNPNDFYEIIRDVCQDMVESVNLI 379


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 494  TPL-RILATDYTSYAVSYTCKYDEKNNSHQVNLWILS 387
            TPL R L+T + S+ +SY   + +K+    + +W  S
Sbjct: 1380 TPLKRSLSTTFYSFLISYNDSFIKKHEEKVLTVWFES 1416


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 240  LHNDAGTAIRTGVIREVCYDQFRFINLL*ILFEEVVDYSLSF 365
            LH D    IRT + +++C+    +  LL  +   +V+ SLSF
Sbjct: 1008 LHVDIQDIIRTRLAQQLCFGPLAYSALLSTISSNLVE-SLSF 1048


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,676
Number of Sequences: 5004
Number of extensions: 29852
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)