Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K22
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0343 - 17748882-17753396                                         28   4.8  
01_03_0100 + 12550646-12550650,12550750-12550846,12551299-125517...    28   4.8  
10_06_0128 - 11039565-11040119,11040727-11040997,11041123-110412...    27   6.4  
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366...    27   8.5  

>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 434 YDEKNNSHQVNLWI-LSRTKTLEGEGKTVVDNFLKENSKEIDES 306
           Y+E  N  Q+++WI +S+        K +V+   K N+K+ +ES
Sbjct: 295 YEEVKNHFQISVWICVSQNFNANVLAKEIVEKMPKGNNKKENES 338


>01_03_0100 +
           12550646-12550650,12550750-12550846,12551299-12551712,
           12552134-12552556
          Length = 312

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -2

Query: 376 LWKAKERL*STTSSKRIQRRLMNRN*S*QTSRMTPVRIAVPASLWSQLDSEDYKLL 209
           L+K +ERL + T S   Q  L+       T R TP+   +  S  + LD+  YKLL
Sbjct: 165 LFKNRERLANGTISPAYQA-LLEALCPPTTGRFTPITTEIDVSTPATLDNNYYKLL 219


>10_06_0128 -
           11039565-11040119,11040727-11040997,11041123-11041217,
           11043553-11043642
          Length = 336

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = -1

Query: 497 KTPLRILATDYTSYAVSYTCKYDEKNNSHQVNLWILSRTKTLEGEGKTVVDNFLKENSKE 318
           K+ L+ILA    +    +        N  +VN+W  S TK  +    ++      ENS +
Sbjct: 254 KSNLQILAGFIAANNHGFVKLMCHMKNLRKVNIWCKSITKGNKLNSLSIAIEKFIENSND 313

Query: 317 IDESKLIVTDFS 282
            ++++ +  DFS
Sbjct: 314 PNDARTLSVDFS 325


>05_01_0463 -
           3666626-3666933,3667060-3667258,3667388-3667629,
           3667823-3669035
          Length = 653

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -1

Query: 443 TCKYDEKNNSHQVNLWILSRTKTLEGEGKTVVDNFLKENSKEIDESKLI 297
           +CK D  ++ H     +    + LEG+ ++++DN L ++   +DE++ I
Sbjct: 556 SCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDNKLLDD-VNLDEAERI 603


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,227,456
Number of Sequences: 37544
Number of extensions: 157847
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)