Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K22
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z70309-9|CAH10784.1|  323|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
           protein H06O01.2 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = -1

Query: 356 TVVDNFLKENSKEIDESKLIVTDFSDDACTYSSSSIVMEPA 234
           T  DN  KE + +  ES    +D SDDA   SSSS   EPA
Sbjct: 34  TSEDNDEKEKAADSPESSSDQSDDSDDASENSSSSEPDEPA 74


>Z70309-9|CAH10784.1|  323|Caenorhabditis elegans Hypothetical
           protein R102.10 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 452 VSYTCKYDEKNNSHQVN-LWILSRTKTLEGEGKTVVDNFLKENSKEIDESKLIV 294
           +SYT  + +KN S + +   I S TKT + + K+V  + L ++S E DE   +V
Sbjct: 79  LSYTITWLDKNASKKTDKASIKSSTKTRDSQRKSVTSS-LSDDSSETDEPVQLV 131


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical
           protein F26H9.8 protein.
          Length = 1377

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 488 LRILATDYTSYAVSYTCKYDEKNNSHQVNLWIL-SRTKTLEGEGKTVVDNFLKE 330
           L +  T+Y +   S T K DE  N H +N  IL +R   L+ E +++ +N  K+
Sbjct: 222 LALKNTEYKAVDSSSTNKLDEPENLHGLNFKILKNRHLELQNELESLRENLEKQ 275


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical
           protein F26H9.8 protein.
          Length = 1377

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -1

Query: 488 LRILATDYTSYAVSYTCKYDEKNNSHQVNLWIL-SRTKTLEGEGKTVVDNFLKE 330
           L +  T+Y +   S T K DE  N H +N  IL +R   L+ E +++ +N  K+
Sbjct: 222 LALKNTEYKAVDSSSTNKLDEPENLHGLNFKILKNRHLELQNELESLRENLEKQ 275


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
            protein C34F6.10 protein.
          Length = 1441

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 371  EGEGKTVVDNFLKENSKEIDESKLIVTDFSDDACTYSSS 255
            EGE  T     LKEN+K +   KL V+D +  A T+S S
Sbjct: 1219 EGENNTAKVKSLKENTKYV--FKLRVSDRATGASTWSES 1255


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical protein
            C34F6.10 protein.
          Length = 1441

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 371  EGEGKTVVDNFLKENSKEIDESKLIVTDFSDDACTYSSS 255
            EGE  T     LKEN+K +   KL V+D +  A T+S S
Sbjct: 1219 EGENNTAKVKSLKENTKYV--FKLRVSDRATGASTWSES 1255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,537,654
Number of Sequences: 27780
Number of extensions: 156087
Number of successful extensions: 447
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)