Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K22
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   4.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 464 TSYAVSYTCKYDEKNNSHQVNLWILSRTKTL 372
           + + + Y      K  S  +N+W LSR + L
Sbjct: 571 SQFLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 464 TSYAVSYTCKYDEKNNSHQVNLWILSRTKTL 372
           + + + Y      K  S  +N+W LSR + L
Sbjct: 571 SQFLLEYRGPVTMKGKSEPMNVWFLSREREL 601


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 272 RRHPRSLLRSISIHQSPLNSL 334
           R+H + LLR++ +H   L+ L
Sbjct: 284 RKHEQRLLRNVGVHTVVLDLL 304


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 369 RRRKDCSRQLPQREFKGD 316
           R+R  CSR+  Q+ +K +
Sbjct: 269 RKRYSCSREREQKSYKNE 286


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -1

Query: 443  TCKYDEKNNSHQVNLWILSRTKTLEGEGKTVV 348
            T +  E + + + + W+ + T   EGE   +V
Sbjct: 1236 THEASELDKTRRYDFWVTASTNIGEGEASKIV 1267


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 461 SYAVSYTCKYDEKNNSHQVNLW 396
           +Y  +Y  KY+  NN++   L+
Sbjct: 95  NYKYNYNNKYNYNNNNYNKKLY 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,141
Number of Sequences: 438
Number of extensions: 2367
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)