Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_K21
(554 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT020041-1|AAV38844.1| 217|Homo sapiens ribosomal protein L10a ... 238 1e-62
BT020040-1|AAV38843.1| 217|Homo sapiens ribosomal protein L10a ... 238 1e-62
BC070216-1|AAH70216.1| 217|Homo sapiens ribosomal protein L10a ... 238 1e-62
BC011366-1|AAH11366.1| 217|Homo sapiens ribosomal protein L10a ... 238 1e-62
BC006791-1|AAH06791.1| 217|Homo sapiens ribosomal protein L10a ... 238 1e-62
AL022721-5|CAB38627.1| 217|Homo sapiens ribosomal protein L10a ... 238 1e-62
AB082926-1|BAC16802.1| 217|Homo sapiens ribosomal protein L10a ... 238 1e-62
U12404-1|AAA86463.1| 217|Homo sapiens Csa-19 protein. 237 1e-62
BC116456-1|AAI16457.1| 206|Homo sapiens RPL10A protein protein. 217 2e-56
X97999-1|CAA66636.1| 349|Homo sapiens transcription factor IID ... 29 8.3
U18062-1|AAB60347.1| 349|Homo sapiens TFIID subunit TAFII55 pro... 29 8.3
BC032737-1|AAH32737.1| 349|Homo sapiens TAF7 RNA polymerase II,... 29 8.3
AF349038-1|AAK30585.1| 349|Homo sapiens TFIID subunit TAFII55 p... 29 8.3
>BT020041-1|AAV38844.1| 217|Homo sapiens ribosomal protein L10a
protein.
Length = 217
Score = 238 bits (582), Expect = 1e-62
Identities = 114/173 (65%), Positives = 127/173 (73%)
Frame = +3
Query: 36 SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 215
SKVSRDTLYE V V+ ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK PRPK
Sbjct: 3 SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62
Query: 216 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 395
VC+LGDQQHCDEAK +D+P M SESLIKQIPR
Sbjct: 63 FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122
Query: 396 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMT 554
+LGPGLNKAGKFP LL+H E+M K+DEVK TIKFQMKKVLCL+VAVGHV MT
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMT 175
>BT020040-1|AAV38843.1| 217|Homo sapiens ribosomal protein L10a
protein.
Length = 217
Score = 238 bits (582), Expect = 1e-62
Identities = 114/173 (65%), Positives = 127/173 (73%)
Frame = +3
Query: 36 SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 215
SKVSRDTLYE V V+ ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK PRPK
Sbjct: 3 SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62
Query: 216 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 395
VC+LGDQQHCDEAK +D+P M SESLIKQIPR
Sbjct: 63 FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122
Query: 396 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMT 554
+LGPGLNKAGKFP LL+H E+M K+DEVK TIKFQMKKVLCL+VAVGHV MT
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMT 175
>BC070216-1|AAH70216.1| 217|Homo sapiens ribosomal protein L10a
protein.
Length = 217
Score = 238 bits (582), Expect = 1e-62
Identities = 114/173 (65%), Positives = 127/173 (73%)
Frame = +3
Query: 36 SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 215
SKVSRDTLYE V V+ ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK PRPK
Sbjct: 3 SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62
Query: 216 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 395
VC+LGDQQHCDEAK +D+P M SESLIKQIPR
Sbjct: 63 FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122
Query: 396 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMT 554
+LGPGLNKAGKFP LL+H E+M K+DEVK TIKFQMKKVLCL+VAVGHV MT
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMT 175
>BC011366-1|AAH11366.1| 217|Homo sapiens ribosomal protein L10a
protein.
Length = 217
Score = 238 bits (582), Expect = 1e-62
Identities = 114/173 (65%), Positives = 127/173 (73%)
Frame = +3
Query: 36 SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 215
SKVSRDTLYE V V+ ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK PRPK
Sbjct: 3 SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62
Query: 216 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 395
VC+LGDQQHCDEAK +D+P M SESLIKQIPR
Sbjct: 63 FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122
Query: 396 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMT 554
+LGPGLNKAGKFP LL+H E+M K+DEVK TIKFQMKKVLCL+VAVGHV MT
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMT 175
>BC006791-1|AAH06791.1| 217|Homo sapiens ribosomal protein L10a
protein.
Length = 217
Score = 238 bits (582), Expect = 1e-62
Identities = 114/173 (65%), Positives = 127/173 (73%)
Frame = +3
Query: 36 SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 215
SKVSRDTLYE V V+ ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK PRPK
Sbjct: 3 SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62
Query: 216 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 395
VC+LGDQQHCDEAK +D+P M SESLIKQIPR
Sbjct: 63 FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122
Query: 396 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMT 554
+LGPGLNKAGKFP LL+H E+M K+DEVK TIKFQMKKVLCL+VAVGHV MT
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMT 175
>AL022721-5|CAB38627.1| 217|Homo sapiens ribosomal protein L10a
protein.
Length = 217
Score = 238 bits (582), Expect = 1e-62
Identities = 114/173 (65%), Positives = 127/173 (73%)
Frame = +3
Query: 36 SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 215
SKVSRDTLYE V V+ ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK PRPK
Sbjct: 3 SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62
Query: 216 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 395
VC+LGDQQHCDEAK +D+P M SESLIKQIPR
Sbjct: 63 FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122
Query: 396 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMT 554
+LGPGLNKAGKFP LL+H E+M K+DEVK TIKFQMKKVLCL+VAVGHV MT
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMT 175
>AB082926-1|BAC16802.1| 217|Homo sapiens ribosomal protein L10a
protein.
Length = 217
Score = 238 bits (582), Expect = 1e-62
Identities = 114/173 (65%), Positives = 127/173 (73%)
Frame = +3
Query: 36 SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 215
SKVSRDTLYE V V+ ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK PRPK
Sbjct: 3 SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62
Query: 216 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 395
VC+LGDQQHCDEAK +D+P M SESLIKQIPR
Sbjct: 63 FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPR 122
Query: 396 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMT 554
+LGPGLNKAGKFP LL+H E+M K+DEVK TIKFQMKKVLCL+VAVGHV MT
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMT 175
>U12404-1|AAA86463.1| 217|Homo sapiens Csa-19 protein.
Length = 217
Score = 237 bits (581), Expect = 1e-62
Identities = 114/173 (65%), Positives = 127/173 (73%)
Frame = +3
Query: 36 SKVSRDTLYECVNAVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 215
SKVSRDTLYE V V+ ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK PRPK
Sbjct: 3 SKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPK 62
Query: 216 MQVCILGDQQHCDEAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 395
VC+LGDQQHCDEAK +D+P M SESLIKQIPR
Sbjct: 63 FSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLVKKYDAFLASESLIKQIPR 122
Query: 396 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMT 554
+LGPGLNKAGKFP LL+H E+M K+DEVK TIKFQMKKVLCL+VAVGHV MT
Sbjct: 123 ILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMT 175
>BC116456-1|AAI16457.1| 206|Homo sapiens RPL10A protein protein.
Length = 206
Score = 217 bits (531), Expect = 2e-56
Identities = 103/160 (64%), Positives = 117/160 (73%)
Frame = +3
Query: 75 AVIQSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCILGDQQHCD 254
+V+ ++ K+RKFLETVELQI LKNYDPQKDKRFSGTV+LK PRPK VC+LGDQQHCD
Sbjct: 5 SVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCD 64
Query: 255 EAKQLDVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFP 434
EAK +D+P M SESLIKQIPR+LGPGLNKAGKFP
Sbjct: 65 EAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFP 124
Query: 435 GLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMT 554
LL+H E+M K+DEVK TIKFQMKKVLCL+VAVGHV MT
Sbjct: 125 SLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMT 164
>X97999-1|CAA66636.1| 349|Homo sapiens transcription factor IID
protein.
Length = 349
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 84 QSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQ 221
+ K+K++KF+ + + LKN + +RF T K KYI P ++
Sbjct: 121 KKDKDKEKKFIWNHGITLPLKNV---RKRRFRKTAKKKYIESPDVE 163
>U18062-1|AAB60347.1| 349|Homo sapiens TFIID subunit TAFII55
protein.
Length = 349
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 84 QSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQ 221
+ K+K++KF+ + + LKN + +RF T K KYI P ++
Sbjct: 121 KKDKDKEKKFIWNHGITLPLKNV---RKRRFRKTAKKKYIESPDVE 163
>BC032737-1|AAH32737.1| 349|Homo sapiens TAF7 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 55kDa
protein.
Length = 349
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 84 QSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQ 221
+ K+K++KF+ + + LKN + +RF T K KYI P ++
Sbjct: 121 KKDKDKEKKFIWNHGITLPLKNV---RKRRFRKTAKKKYIESPDVE 163
>AF349038-1|AAK30585.1| 349|Homo sapiens TFIID subunit TAFII55
protein.
Length = 349
Score = 29.5 bits (63), Expect = 8.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 84 QSSKEKKRKFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQ 221
+ K+K++KF+ + + LKN + +RF T K KYI P ++
Sbjct: 121 KKDKDKEKKFIWNHGITLPLKNV---RKRRFRKTAKKKYIESPDVE 163
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,551,587
Number of Sequences: 237096
Number of extensions: 1174652
Number of successful extensions: 2026
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2017
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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