Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K20
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   252   3e-68
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   251   4e-68
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    43   3e-05
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    29   0.60 
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   2.4  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   4.2  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    25   7.3  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   7.3  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   9.7  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  252 bits (616), Expect = 3e-68
 Identities = 119/163 (73%), Positives = 134/163 (82%)
 Frame = +3

Query: 60  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 239
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 240 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
           KDPKRLFEGNA           DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 420 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGG 548
           AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGG
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGG 167


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  251 bits (615), Expect = 4e-68
 Identities = 119/163 (73%), Positives = 134/163 (82%)
 Frame = +3

Query: 60  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 239
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 240 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 419
           KDPKRLFEGNA           DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 420 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGG 548
           AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGG
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGG 167


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 27/123 (21%), Positives = 49/123 (39%)
 Frame = +3

Query: 123 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 302
           +++ ++  Y +  + E  +      + R+ A  L  L+  DP RL   N           
Sbjct: 28  RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87

Query: 303 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 482
              K    D      +     RRL   + K  +++ +  A  LI Q H+RV   V+  P+
Sbjct: 88  LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147

Query: 483 FIV 491
           ++V
Sbjct: 148 YLV 150


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 272 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETIL 144
           SI F+ S RIL     Q T  LT  S     + HF ++  TIL
Sbjct: 18  SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -3

Query: 374 KTALQEVLNLQTEHI-IQFHLFLIKHSDPNQTT**SIAFKQSLRILLLECQQFTGSLTDA 198
           KT++ E+ N    H+  +F   ++K  +  Q         QSL     E   FT SL   
Sbjct: 187 KTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLHATDTETHTFTDSLVVL 246

Query: 197 SERVLDAPHFTLVAETILSDDLQLL 123
           +E V+D    T +++ +L  D + L
Sbjct: 247 NEVVIDRGPNTAMSDIMLYVDSKYL 271


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 318 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 449
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 372 DGAPRSPQSSNRAHNPVSSVSHQALRP 292
           DGA  S Q+   AHNP +SVS + +RP
Sbjct: 90  DGA--SSQNDAFAHNPSTSVSVELVRP 114


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 380 SGVQGWSCEVNPSCP 424
           +G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 33  LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 191
           ++K VN      FS +    +R  + A +D   + + E   RN++   +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 407 VNPSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLS 526
           V+ + P +++  +   P  GG HS + RP   R +  LLS
Sbjct: 113 VSVNAPIVNEV-SLQAPMKGGSHSSIVRPQAKRSSSRLLS 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,899
Number of Sequences: 5004
Number of extensions: 42540
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)