Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_K19
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    64   1e-11
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.12 
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   3.3  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   4.4  
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    25   5.8  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    25   7.7  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.7  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
 Frame = +1

Query: 151 SIEEVYAEQLAKIPGIERLGPIFKTN-QPIDLTEAETEYRVRLLKHVYAQHVVLQFECVN 327
           +IE  +   L  +      GP+ K++  PI+LTE ETE+ V+++KHV+  H+V+QF+  N
Sbjct: 640 NIETEFLNALESVSEFNEYGPVLKSSPSPIELTEQETEFVVKVVKHVFKDHLVVQFQLHN 699

Query: 328 TLCDQILEQVHVRLECPPEYEVVS--IIPWQKLLYDKPGSVFVVVEY 462
           TL + ILE   V +  P   ++V   ++P   ++  +P S+FV  ++
Sbjct: 700 TLSEVILENA-VVVSTPSTDDLVEECVVP-AAIVSGEPVSIFVSFKF 744


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
 Frame = -2

Query: 458 STTTNTLPGLS*SNFCQG--IIDTTSYSGGHSNLTCTCSNI*SQSV-FTHSNXXXXXXXX 288
           ST ++  P  + S++     ++ ++S     S+ T T S++ + S+  T S+        
Sbjct: 195 STFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSL 254

Query: 287 XCFNKRTRYSVSASVRSIG*FVLKMGPNLSIPGILASCSAYTSSIETCTGLRTSISTIDS 108
              +  +  S S+S  SI            I    +S S+ TS+  T +   +S S+  S
Sbjct: 255 SSSSSSSTASSSSSSSSI------------ISSSSSSSSSPTSTSSTISSSSSSSSSPTS 302

Query: 107 LVSLGSSSEGTDIILKGSLGAVAMWSRRAFSSNP 6
             S  SSS  +      +L + +M S  +FSS+P
Sbjct: 303 TSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSP 336


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -2

Query: 179 SCSAYTSSIETCTGLRTSISTIDSLVSLGSSSEGTDIILKGSLGAVAMWSRRAFSSN 9
           SCS    SI   T     + T  SL+SL SSS         SLG++++ S  + S N
Sbjct: 10  SCSLRQLSISP-TAPPGDVGTPGSLLSLSSSSSSNTDSSGSSLGSLSLNSNSSGSDN 65


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -2

Query: 263 YSVSASVRSIG*FVLKMGPNLSIPGILASCSAYTSSIETCTGLRTSISTIDSLVSLGS 90
           Y+  A  R  G  ++  G   ++P  +A CSA  +      G+ +S++ +  L +LGS
Sbjct: 430 YAPRAWSRYGGLLMIGFGLGPTVPICMAWCSASMAKTYGDVGVASSLALVTGLGNLGS 487


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 376 PPEYEVVSIIPWQKLLYDKPGSVFVVVEYPS 468
           P  YE+  I+P  +L+ D P  + ++ E+ S
Sbjct: 123 PELYELSKIVPHLRLMIDNPKQLDILREFTS 153


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 241 LTEAETEYRVRLLKHVYAQHV 303
           LT A  EYR R LKH+ A  V
Sbjct: 411 LTAARDEYRNRYLKHLQAYGV 431


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 211 PIFKTNQPIDLTEAETEYRVRLLKHVYAQHVVLQFECVNTLCDQIL 348
           P+F+   P++  E +      + KHVY+Q+V L  +      +Q++
Sbjct: 64  PLFEL--PVNSLELQNSVSNDMFKHVYSQNVELNHKTQVDFTEQLI 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,792
Number of Sequences: 5004
Number of extensions: 32897
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)